- Probe CUST_3651_PI390587928
- Source Contig U35_28100
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3651_PI390587928 | Hv_44K_v2 | ACGTACGTGTACAACATGAAGAACACGGTGGGCGACAAGGACAAGCTGGCGGACAAACTG | 540 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55999.2 | 2270 | 3e-21 | 175 - 234 | 97 | 58 / 60 | minus | ABC01615 ABC49394 |
| MLOC | MLOC_55999.1 | 2532 | 3e-21 | 548 - 607 | 97 | 58 / 60 | minus | ABC01615 ABC49394 |
| JLOC1 | JLOC1_36176.1 | 2683 | 2e-21 | 1974 - 2033 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC26731 | 611 | 3e-25 | 541 - 600 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49394 | 2028 | 6e-22 | 1810 - 1869 | 97 | 58 / 60 | plus | ABC49394 |
| Harvest21 | ABC01615 | 1474 | 6e-22 | 609 - 668 | 97 | 58 / 60 | plus | ABC01615 |
| Harvest21 | ABC01610 | 2375 | 6e-22 | 1811 - 1870 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_28100 | 611 | 3e-25 | 541 - 600 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47882 | 2028 | 6e-22 | 1810 - 1869 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14470 | 2463 | 6e-22 | 1829 - 1888 | 97 | 58 / 60 | plus |
Contig Sequence (611 bp)
>U35_28100 611 Hv_44K_v2 CTGCAGGACTTCTTCCGAGGCTTCGGAGCTGCAGTGCAGGGAAGCATCTTGAGCGGTGAG GGCGGTGACGAGACCAAAGATATCCTTCTCCTTGATGTGGCGCCCCTGACCCTTGGTATC GAGACTGTTGGAGGAGTCATGACCAAGCTGATCCCCAGGAACACTGTCATCCCCACCAAG AAGTCGCAGGTTTTCACCACCTACCAGGACCAGCAGACCACCGTCTCCATCCAGGTCTTT GAGGGTGAGCGCAGTATGACCAAGGACTGCCGTCTTCTCGGCAAGTTTGACCTTTCTGGC ATTCCCGCAGCTCCAAGGGGCACTCCTCAGATTGAGGTCACCTTCGAGGTTGACGCCAAC GGTATCCTGAACGTGAAGGCGGAGGACAAGGGCACGGGCAAGTCTGAGAAGATCACCATC ACGAACGAGAAGGGGCGCCTGAGCCAGGAGGAGATCGACCGGATGGTCAAGGAGGCGGAG GAGTTTGCCGAGGAGGACAAGAAGGTGAAGGAGCGCATTGACGCCCGGAACCAGCTGGAG ACGTACGTGTACAACATGAAGAACACGGTGGGCGACAAGGACAAGCTGGCGGACAAACTG GAGAGCGAGGA
Homology of Contig U35_28100 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g02410.1 | 666 | 9e-115 | protein|DnaK family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g01477.2 | 638 | 4e-115 | |
| Arabidopsis v10 | AT5G28540.1 | 669 | 1e-107 | | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669 |