barSeed - Barley Seed Development Database

Probe CUST_36500_PI390587928

Source Contig U35_46861

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36500_PI390587928	Hv_44K_v2	GAACAAAAGTTACAGCAGACAGGGTTGCTGTTGTAGTTGCAAATGAGTGGAAAGATGGCA	601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66376.2	2642	7e-23	1422 - 1481	98	59 / 60	minus	ABC19193
JLOC1	JLOC1_43730.1	2562	4e-23	1159 - 1218	98	59 / 60	plus
Harvest21	ABC47486	694	3e-25	602 - 661	100	60 / 60	plus
Harvest35	U35_46861	694	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_46861 694 Hv_44K_v2
GAGCTCACTGATGAATTGGAGAAGCTGGATGAGAAGCTCAAGGTGACAGAGTCTCTCCTC
GATAGCAAAAATCTAGAACTGAAAAAAACAAATGATGAGAAGAAAGCAGCTATGGCAGCC
CAGTTTGCAGCAGAAGCAACACTGCGTAGAGTACATGCAGCCCAAAAGGATGATGATATG
CCACCTATTGAAGCCATTCTAGCACCACTTGAAGCCGAGTTAAAGCTTGCTCGGCAAGAG
ATTGCAAAGCTCCAAGAGGACAATAGAGCATTAGATCGTTTGACAAAGCAGAAGGAGGCA
GCACTGCTAGAAGCAGAAAGGACTGTACAAACTGCATTAGCGAAAGCTGCTATGGTTGAT
GACATGCAAAACAAGAACCAAGATCTGATGAAGCAAATTGAGATCTGCCAGGAAGAAAAT
AAGATTTTGGATAGATTGCACCGCCAAAAAGTTGCGGAAGTCGAAAAGCTTAGTCAAACA
GTCAGAGAGCTTGAAGAGGCTGTCCTTGCTGGTGGTGCAGCTGCTAATGCTGTTAGAGAT
TACCAGCGGAAAGTCCAGGAAATGAATGAAGAAAGAAAAGTTCTTGACCGTGAACTTGCT
CGAACAAAAGTTACAGCAGACAGGGTTGCTGTTGTAGTTGCAAATGAGTGGAAAGATGGC
AATGACAAAGTAATGCCGGTTAAACAGTGGCTTG

Homology of Contig U35_46861 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50320.1	600	2e-112	protein\|ATMAP70 protein, putative, expressed
Brachypodium v1_2	Bradi3g59920.1	600	1e-116
Arabidopsis v10	AT1G68060.1	622	1e-106	\| Symbols: ATMAP70-1, MAP70-1 \| microtubule-associated proteins 70-1 \| chr1:25511392-25514226 REVERSE LENGTH=622