barSeed - Barley Seed Development Database

Probe CUST_36494_PI390587928

Source Contig U35_46867

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36494_PI390587928	Hv_44K_v2	TTCTTTCTATTTTGTCACTGTGCTGCTTTTCTATATCAAAGGGGCTGCACATTACCTCGT	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75202.5	750	9e-22	685 - 739	100	55 / 55	plus	ABC02822 ABC42355 ABC44733
MLOC	MLOC_75202.1	2186	9e-22	2121 - 2175	100	55 / 55	plus	ABC02822 ABC17757 ABC42355 ABC44733
JLOC1	JLOC1_50157.1	4007	5e-22	1237 - 1291	100	55 / 55	plus
Harvest21	ABC47495	653	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_46867	653	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (653 bp)

>U35_46867 653 Hv_44K_v2
TGAACGAGGTAATGTGCAGCCCCTTTGATATAGAAAAGCAGCACAGTGACAAAATAGAAA
GAACTTGTACAGCACAACAAAAGCCGTCTTTGGTACACTTGTAAATCAAGATGCAAAGGC
AAGGACAACTAAACACAATTTTTGTATGAACGAAATTGGAAACAAGGCGGGAAAGTCCAA
GTAAGGATTTGCTTAAATCCTCAAAGCGTCAAAAAAATAAAAATACAGACACCACACAGC
AATGTTTCCTTCAACATAATCATTTATTAAAGGTCTATCAGCAACTTCAGAGGTAAGAGA
AGAGCTGCAGCAGTTCAAGTTACTCCTTTTAGTTCCGATGGAGAGAAGACCTGTCCATTC
CAGGAACAGCAGGAGAAGCAGCCGAGCTACTCCTCGACCTCGACCACCTTCTTGGGCTCG
TGGAGGTCCGCCGGGCGGTGGTCCTTGCCCCATCCGACGCCGCGGGTGGACTCGAGGTAC
TGGTCGACGAGGTGGCGGCACTTCTGGTGGTGGTTGACGCCCTCGATCCGGTAGCACCAG
CGGAGGCGGTCACGGATGATCTTGGCGGTCTCGATCTGGATCCACTTCTCCCGCACCAGG
TGCTCCCTGTACTCCAGCATCGCCACCGGGTCCCCGTACGGGTTCTTCGGGTC

Homology of Contig U35_46867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42540.1	106	2e-54	protein\|expressed protein
Brachypodium v1_2	Bradi3g34360.1	106	1e-58
Arabidopsis v10	None