barSeed - Barley Seed Development Database

Probe CUST_3647_PI390587928

Source Contig U35_28102

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3647_PI390587928	Hv_44K_v2	ACATTGTACAATGCTGATGTTGGTCTTTACATGCTTGCGAATAAGTGGATGGTTGATGAG	465	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373328	2092	2e-24	762 - 821	100	60 / 60	plus	ABC25252
MLOC	MLOC_10600.3	1371	2e-24	906 - 965	100	60 / 60	minus	ABC25252
MLOC	MLOC_10600.5	1816	2e-24	1344 - 1403	100	60 / 60	minus	ABC25252
MLOC	MLOC_10600.1	1747	2e-24	1275 - 1334	100	60 / 60	minus	ABC25252
MLOC	MLOC_10600.2	1404	2e-24	908 - 967	100	60 / 60	minus	ABC25252
MLOC	MLOC_10600.4	2260	2e-24	1252 - 1311	100	60 / 60	minus	ABC25252
MLOC	MLOC_10600.6	1385	2e-24	915 - 974	100	60 / 60	minus	ABC25252
JLOC1	JLOC1_6943.2	1965	8e-25	440 - 499	100	60 / 60	plus
JLOC1	JLOC1_6943.1	2109	8e-25	411 - 470	100	60 / 60	plus
Harvest21	ABC26739	670	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_28102	670	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_28102 670 Hv_44K_v2
CCGGGTCTGCAGGGCTCGGACGGCGTCTCCGACTACTCTAGGAAGCTCCTCGAGGCTGAC
GGTTTTATAGTGAAGCATATAACGTTGCTGGCTAATCCTAATCAAGTGAGGCCAACAAGG
TTTTGGGGTGTGTATACCAAATTGAAAATATTCAACATGACTACCTACAGAAAAGTTGTT
TATCTCGATGCAGACACAGTTGTGGTGAAAAGTATCGAGGATCTTTTCAACTGTGGAAAG
TTCTGTGCAAACTTGAAACATTCTGAGAGAATGAATTCTGGAGTAATGGTTGTTGAGCCA
TCTGAAACTCTTTTCAAGGATATGATGAACAAAGTTGACAGCTTACCTTCTTACACGGGA
GGAGATCAAGGTTTTCTCAATTCGTATTATGCTGATTTTGCCAATTCCCGCGTATATAAT
CCCAATAAACCTTTAACGCCTGAACCTGAGACTCAACGCCTTTCCACATTGTACAATGCT
GATGTTGGTCTTTACATGCTTGCGAATAAGTGGATGGTTGATGAGAAAGAACTTAGGGTT
ATTCACTACACACTTGGACCTCTTAAGCCATGGGACTGGTGGACAGCTTGGCTTGTTAAA
CCTGTAGCTGTATGGCAGGATGTTAGGCAAAATCTTGAAGAATCTCTTCCTGGAACTGGT
GGAGGGAAAA

Homology of Contig U35_28102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41520.1	548	3e-151	protein\|glycosyl transferase 8 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g49197.1	536	7e-155
Arabidopsis v10	AT5G18480.1	537	9e-122	\| Symbols: PGSIP6 \| plant glycogenin-like starch initiation protein 6 \| chr5:6131307-6133787 REVERSE LENGTH=537