barSeed - Barley Seed Development Database

Probe CUST_36477_PI390587928

Source Contig U35_46878

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36477_PI390587928	Hv_44K_v2	AATAATCTAGCTGCCCCTGCTTCAGTTACATTGTTTGGCTAGTAGACATAATCTGACGAC	582	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371819	949	2e-24	697 - 756	100	60 / 60	plus	ABC03409 ABC03410 ABC03412
MLOC	MLOC_62602.4	1688	2e-24	1414 - 1473	100	60 / 60	plus	ABC03409 ABC03410
MLOC	MLOC_62602.5	1658	2e-24	1402 - 1461	100	60 / 60	plus	ABC03409 ABC03410
JLOC1	JLOC1_40981.4	3112	8e-25	2717 - 2776	100	60 / 60	plus
JLOC1	JLOC1_40981.3	1809	8e-25	1414 - 1473	100	60 / 60	plus
JLOC1	JLOC1_40981.2	1800	8e-25	1405 - 1464	100	60 / 60	plus
JLOC1	JLOC1_40981.1	989	8e-25	594 - 653	100	60 / 60	plus
Harvest21	ABC47520	657	3e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC28799	708	3e-25	584 - 643	100	60 / 60	plus
Harvest21	ABC03409	999	3e-25	726 - 785	100	60 / 60	plus	ABC03409
Harvest35	U35_46878	657	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_1253	856	3e-25	583 - 642	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_46878 657 Hv_44K_v2
GAAAATCGAGTTTATATAGTTTAGGGTTAGTTACCTCCCTGAAGAAGTGAAGGAAGGCTA
GAAATCTGCTGTACAGACTTGCAAATGGCGCTTGAGACTCGGACCTGCATGTGATGTGGT
GTGATTCTAGACCGCTGATCCAGTGAGAATCACCTGAACAGTGCATAGGTTGACTATGCT
TGTACGCCAGAGGAAGTGCAGCAGCATTTTCAAGCTTGTGGAACCGTCAACAGAGTGACA
ATCTTGACTGACAAGTTTGGGCAGCCAAAAGGCTTTGCTTACGTGGAATTTCTAGAACAA
GAAGCTGTTCAGGAGGCTCTTAATCTGAATGAATCTGAATTGCATGGTCGTCAGATCAAG
GTGTCACCAAAGAGGACTAACGTCCCTGGGATGAAGCAGCGTCCTCCACGAGGATTCAGT
CCCTACCATGCTTACCCTTATAGGTCATACGGTGCACCGTATTTTCCACCATATGGATAT
GGGAGAGTTCCCAGATTCCGCCGGCCAACACGATACAGGCCGTACTTTTGAGAGAAGAAG
GCTCTCATGAAGTCCAATGCATTGCCAGTAGCCATACTGCGGAATAATCTAGCTGCCCCT
GCTTCAGTTACATTGTTTGGCTAGTAGACATAATCTGACGACGGTCGAATGCCCCTA

Homology of Contig U35_46878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52140.2	213	4e-60	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g58600.1	211	2e-61
Arabidopsis v10	None