- Probe CUST_36474_PI390587928
- Source Contig U35_46881
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36474_PI390587928 | Hv_44K_v2 | TTCAAAGATGTGTAGCACTGATATTGTTGGTGCACCTTGTGTCCAAGAGACAAACGAGAT | 542 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.384 | 1.067 | 1.339 | 0.993 | 0.610 | 0.492 |
| Raw | 89.237 | 103.051 | 116.895 | 129.095 | 28.698 | 25.574 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_17764.5 | 2811 | 2e-24 | 281 - 340 | 100 | 60 / 60 | plus | ABC47523 |
| MLOC | MLOC_17764.4 | 1393 | 2e-24 | 357 - 416 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_17764.2 | 3412 | 2e-24 | 975 - 1034 | 100 | 60 / 60 | plus | ABC47523 |
| MLOC | MLOC_17764.3 | 3749 | 2e-24 | 958 - 1017 | 100 | 60 / 60 | plus | ABC47523 |
| MLOC | MLOC_17764.1 | 3466 | 2e-24 | 994 - 1053 | 100 | 60 / 60 | plus | ABC47523 |
| JLOC1 | JLOC1_12268.2 | 3883 | 8e-25 | 977 - 1036 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47524 | 605 | 3e-25 | 543 - 602 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46881 | 605 | 3e-25 | 543 - 602 | 100 | 60 / 60 | plus |
Contig Sequence (605 bp)
>U35_46881 605 Hv_44K_v2 ACAGATGTCATGGCTGCCAAGTATAAATGGGCCGTGAATAACCTGAAGAAGCCTATTGTC AATAGGAACTGGTTGGAGCAATGCTGGATCGAACATCGTGTCGTGCCTCATGAACCGTAC AAGATTCTTCCTTTTACTGGGTTGAATATATGCATCACAAAACTAGATGCAGATAAACGG AAGGAGTTGATGGAAATAATAGAGCAGAATGGTGGCCAGTATTCAGCAAATCTTACAAAG AAGTGCACTCATTTAGTTGCGAATGAACCTGGCGGTGACAAATATCTTGCAGCTAAAAGA TGGGGTAATATTCAAATTGTGAATCAGAGATGGGTTGGCCAATCCGTTGCTCGAAGAGCT TATCTAGATGAAAGTGCCTATGCTATTGGCCAGAGTTCTAATAATTATAATGGCATAAAG GGTTCCTTTAAAGAACAACGGAACCCAGAGATGAGCAGTGCAAGTTTTCAATCTGTTCCA GCAGCATCAGTTGATGATTCAGTATCAATGTCACAGAATGTGCCAGTTTCTTCTGGCTAT GCTTCAAAGATGTGTAGCACTGATATTGTTGGTGCACCTTGTGTCCAAGAGACAAACGAG ATGCT
Homology of Contig U35_46881 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g08660.1 | 902 | 1e-87 | protein|TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |