- Probe CUST_36473_PI390587928
- Source Contig U35_46882
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36473_PI390587928 | Hv_44K_v2 | CTGGGTTGGCATCTTCACAAAATTTATCACTGCAATTCTGTGATTGTATACTAGTATTTG | 137 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.219 | 1.418 | 1.219 | 0.992 | 0.320 | 0.202 |
| Raw | 731.665 | 1398.428 | 996.208 | 1313.935 | 146.448 | 98.534 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18223.1 | 2317 | 2e-24 | 854 - 913 | 100 | 60 / 60 | plus | ABC47527 |
| JLOC1 | JLOC1_12605.1 | 2167 | 8e-25 | 1404 - 1463 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC47527 | 587 | 3e-25 | 138 - 197 | 100 | 60 / 60 | minus | ABC47527 |
| Harvest35 | U35_46882 | 587 | 3e-25 | 138 - 197 | 100 | 60 / 60 | minus |
Contig Sequence (587 bp)
>U35_46882 587 Hv_44K_v2 TTTTTTTTTTTTTTTTTATGCTCAGATGCTAACTCTGAATCTTTGAATATAATCTCCAAT CAAGCAATACAATAATAGAATTACAGTGACAAATTATGCTCAGATGCTAACTATGAATCT GTGAATTCATCTCCAATCAAATACTAGTATACAATCACAGAATTGCAGTGATAAATTTTG TGAAGATGCCAACCCAGAATCTCCAAATGCATCTCGAATCAAGTACGTAATACACTGGGT TACAGTGATAATTTCTCGAAGGACAAAGCTTGGGAACTTATCTCCGTCCTCTGGCCGACG TCTTCGTCCACCTCGAAGAAATGCCAGCTCGTCTCGTTGAACGCACGGGCGAACCAGTCC TCGTCGTCCACATCCCCGGCGTCGTCGATCCGCTGCTCCCACGCGAACCGCGCTGCCTTG AGAACAAGATTGGCCTTGGCGGCGGGCCCCGAGCGGTTCTCTTCCGCCTGCAGAGCGTAC CGCCGGAAGCTGTTGCCGAGCACGCAGACGCGGCGGAGCTGAGCGCGGGGCTCCCAGTTG GCTCCGAGGAGCGCGTCGTAGAGCGACGCCTCGCAGTGGGGCATGTA
Homology of Contig U35_46882 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g37730.1 | 287 | 4e-58 | |
| Arabidopsis v10 | None |