barSeed - Barley Seed Development Database

Probe CUST_36470_PI390587928

Source Contig U35_46885

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36470_PI390587928	Hv_44K_v2	TACCAATACCCTTGATGGCAGTTGAGCTAACTATGACAACTGATGCAAAAACTCCTGATG	562	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.437	1.276	1.112	0.760	0.480	0.456
Raw	1928.713	2570.300	1999.893	2029.242	477.200	503.664

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_37496.1	5530	6e-21	3244 - 3302	97	58 / 60	plus
Harvest21	ABC47530	622	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_46885	622	3e-25	563 - 622	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_46885 622 Hv_44K_v2
ACTTATGGAGCATCACCAACCAACAGCTTGATGATCCTTATGGGTCGAAGCATACTACAT
TGCCAGCTGGTGATTCTATGAATCTTGGTGTTCGAACAATTCAAGAGGTTCTTGAAGCTG
ATCGTATTTTGGCTAACCATGGTGCACCGCAGGGGCAACAATCTAGTCAAGCATTTATGA
ATATGAGGGGTATGGAGGGTGTTGGAACATCACAAAGCTCTGTACCTACCGTGCCATTGC
CTCATGAATTTTTTATGGGTGCACCTTCAAAAGAACGGTTTCCCCATCCTCAGAAGTTGG
AAAACTCAGCAAGTGATAACACTCAACTTAGTGCAAGTATGGTCAATACGATGCAAACAG
AAGTTGCAGAAAGGTACAAGGATGCTTCTGGAAACTATCAGCAAGTTGGAATAGGTAAAG
TTGAAAGTAGGCCTGCAAATGTTTTGAGTTTAAGATCTACAGAGACCAGCAGTTCAGCTC
TTAGTGAAGCTAAGGGTTTTCCTGAGACACCACTGAATACAATATCCGAGACCATGCCAC
CTCATAATCGTGTCCAGGAAATTACCAATACCCTTGATGGCAGTTGAGCTAACTATGACA
ACTGATGCAAAAACTCCTGATG

Homology of Contig U35_46885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None