- Probe CUST_36465_PI390587928
- Source Contig U35_46890
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36465_PI390587928 | Hv_44K_v2 | GCCCATGGAGTAGTTATCTTATTGTGTTTGAAAATGTTAAAACATTTGCACGTGGGACTT | 30 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.402 | 1.750 | 1.182 | 0.781 | 0.321 | 0.387 |
| Raw | 173.316 | 330.912 | 194.411 | 206.807 | 30.279 | 38.567 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10591.2 | 2180 | 2e-24 | 2102 - 2161 | 100 | 60 / 60 | plus | ABC47537 ABC49616 |
| Harvest21 | ABC47537 | 500 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus | ABC47537 |
| Harvest35 | U35_46890 | 500 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus |
Contig Sequence (500 bp)
>U35_46890 500 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGCAAACAATGCAAAGTCCCACGTGCAAATGTTTTAACATTTT CAAACACAATAAGATAACTACTCCATGGGCAATGATTTTGGTACCTTCACATGTAACAAG TTAATACGAGCAAATGGTACAAGTTCCACATGCAGGGATGTTATTACCTCTGCAAACATG TTTCTACTCTGCAAGATCAGAGTCATCATCGGCATATTTAGGAGCTGCGTTTCTAGGCAG GAATTCTTCGTTAGGATAAGTATCGGTGAATAACTGTTTTGTCGATTCCAGTATATCTCT GTAGTCCAGGTTTTCATCAGGCATAGGGCAGGACAATACAGTACCAGATGTTCCCTGTGT GATCTCTTGAACATACACATAACTCCAGATTAGCGCTGGCTTTGTATCCTCAATGTTTCT GCTGGTTGTCTCCAAATGGCCTTCTGAATCATCTGAAGCCTGGGTACTGAAAAGAACCTC CATTGCCTTGTTTATGTACT
Homology of Contig U35_46890 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |