barSeed - Barley Seed Development Database

Probe CUST_36448_PI390587928

Source Contig U35_5809

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36448_PI390587928	Hv_44K_v2	CGTAACAATCATCTGTAATGGTTGTCAATAAAAGTGCTGGCATATCCATCTTGTTAATCT	779	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20975.1	1952	2e-24	34 - 93	100	60 / 60	minus	ABC49537
MLOC	AK369445	2096	9e-22	2042 - 2096	100	55 / 55	plus	ABC49537
JLOC1	JLOC1_14545.1	949	8e-25	831 - 890	100	60 / 60	plus
Harvest21	ABC12306	878	3e-25	40 - 99	100	60 / 60	minus
Harvest35	U35_5809	878	3e-25	780 - 839	100	60 / 60	plus

Contig Sequence (878 bp)

>U35_5809 878 Hv_44K_v2
GATATACTTTGGTGATCATCTCTTCAGCGACTTGAGAGGGCCTTCCAAAGCTGGTTGGCG
AACAGCTGCCGTAATTCGTGAACTTGAGGATGAAATAGGAATCCAGAATGGTGACAGCTA
CCGGTTCCAACAGGCAAAATTAGGTATAATACACGATCTACTTGGGAAAGTTCATGCAAC
TGTGGTTAGCACTGAGAAAGGCCAAGTTTACAGAACATTGCTTGATGAGTTGAATGCAGA
AAGGCGCCAATGTCGATCTGGCATGCGAGATCTGTTTAATAGTTCTTTTGGTGCAACATT
CCTTACAGACACAGGAAAGGAATCATCATTTGCCTATCACATTCATCAATATGCAGATAT
CTACACCAGCAAGCTCGAGAACTTCTTGTCATATGCCCCTGAATCATGGCTTCATCCACC
TCACGATATAAAGATCATGCCACATAATGCAAAGGTGCCAGCGAGTTTGTTCAATGGCTC
ATAATAGTTCAGGGTATCCATTTCTTGGGGAGAACCATGGTAGTAGTGCAAGACACAGTG
TTTTTTCTGTCTGGCCATGGGAGCCCTGTCACTGCATTCGGCTAGGTTATGAAGAAACCA
GCAGACTGGATCCAACTGAATAGGCCAGGCATGATGTGCATATTCTTGACTGATGTAAGA
ACCATCGTCCAAGTGAGTAGGCGATTCTTTTGTATAATATCGCTGTATGATGAGCTTTAC
TCTCAGTGGCTGCTCCAGCTTGTTTCAACTATGCGTGTCTTCTAAATACATCCAGGCAAC
GTAACAATCATCTGTAATGGTTGTCAATAAAAGTGCTGGCATATCCATCTTGTTAATCTT
NCTGTTGTTTTTCATAGCATATGTAAAATATTCACATA

Homology of Contig U35_5809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25640.2	521	1e-102	protein\|5-nucleotidase domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g30660.1	537	1e-101
Arabidopsis v10	AT2G23890.1	553	2e-70	HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase \| chr2:10170680-10173622 FORWARD LENGTH=553