barSeed - Barley Seed Development Database

Probe CUST_36430_PI390587928

Source Contig U35_5827

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36430_PI390587928	Hv_44K_v2	AGGTTCTGAGAGTAGCCGAAAAGTGTAGTGGCACAAGAAGTTAGATGATGGATGTTTTTT	678	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.113	1.747	1.362	0.992	0.308	0.239
Raw	2087.368	5025.290	3396.117	3792.273	429.716	358.677

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59762.1	2934	2e-24	25 - 84	100	60 / 60	minus	ABC14020
MLOC	MLOC_59762.2	2011	2e-24	16 - 75	100	60 / 60	minus	ABC14020
MLOC	MLOC_59762.3	2470	9e-22	1 - 55	100	55 / 55	minus	ABC14020
JLOC1	JLOC1_38907.2	2772	8e-25	2510 - 2569	100	60 / 60	plus
JLOC1	JLOC1_38907.1	2499	8e-25	2237 - 2296	100	60 / 60	plus
Harvest21	ABC14020	764	3e-25	679 - 738	100	60 / 60	plus	ABC14020
Harvest35	U35_5827	764	3e-25	679 - 738	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_5827 764 Hv_44K_v2
GCGCGCGCCAGCACGCGGCGGTTCGTGAACGCCGACGAGATCGTGCGGGCGGCGCAGAAG
GTCGGGTTCGAGGTGGTGGTGTCCGAGGGCACGCACGAAGTGGCGCCGTTCGCGGAGCTG
GCCAACACGTGCGACGCCATGCTGGGCGTGCACGGCGCCGGGCTGACCAACATGGTGTTC
CTGCCCACGCGCGGGGTGGTGATCCAGGTGGTGCCGCTGGGCGGGCTGGAGTTCGTCGCC
GGCTACTTCCGGACGCCGTCGAGGGACATGGGATTGAAGTACCTCGAGTACCGGATCTCG
CCGGCGGAGAGCACGCTGACGGAGCAGTACCCGCCGGACCACCCCATCTTCACCGACCCC
GACGGCGTGAAGAGCAAGGGGTGGGAGTCGCTCAAGCAGGTGTACCTCGACAAGCAGGAC
GTCCGGCTCGACCTCAAGAGGTTCCGGCCGCTGCTCAAGAAGGCCATCGCACACATCAGA
GCCAACAAGCTCCAGTGAACCAATCACTTGATCTTCTTTTAGTTATGATGATGATATATA
CCGGTAGTAGTGTGTATGTATCTATATGTGGCAGTGTATGTAGTAGTCTAAGTCTAGCAG
ATGAGATGAGATGAGATGAGATCGATCCACACAACAAAATTGTACGATATGAGAGGCATG
GCGATCGGTTTGTAGATGAGGTTCTGAGAGTAGCCGAAAAGTGTAGTGGCACAAGAAGTT
AGATGATGGATGTTTTTTTTTTCTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g02940.6	672	3e-92	protein\|glycosyltransferase protein, putative, expressed
Brachypodium v1_2	Bradi2g01480.1	664	1e-89
Arabidopsis v10	AT3G18170.1	384	5e-51	Glycosyltransferase family 61 protein \| chr3:6228393-6229547 FORWARD LENGTH=384