barSeed - Barley Seed Development Database

Probe CUST_36428_PI390587928

Source Contig U35_5829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36428_PI390587928	Hv_44K_v2	CCTGCTAGCACTATGGATTTTTTGTTGGTAGGAAGTTGAACATCCATTGATGATCTCAAA	738	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37885.2	4141	2e-23	1733 - 1790	100	58 / 58	plus	ABC12882 ABC42310
MLOC	MLOC_37885.1	3965	2e-23	1733 - 1790	100	58 / 58	plus	ABC12882 ABC42310
MLOC	MLOC_37885.3	2674	2e-23	351 - 408	100	58 / 58	plus	ABC12882 ABC42310
JLOC1	JLOC1_24577.1	2720	1e-23	2288 - 2345	100	58 / 58	minus
JLOC1	JLOC1_24576.1	2769	1e-23	671 - 728	100	58 / 58	plus
Harvest35	U35_5829	809	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_5829 809 Hv_44K_v2
CACTCTACCAACGGCCCTTCTCCCCAATCGCCATCGATTCGTCTGGCCGGAGACCTCTCC
CCCGCCGCAGCCTCCTCATCGCGCGGCGGCGGCCGCCGTCTCTGCCTCACAGCCCGCGTA
CCGGTATCTGAAGAACATCAAAGGAAACGATGGCACTGTCACGCAGTATGAGGACATGTT
TGCATAGTGGAAGACTTGCCGCCCTGGCAATATTAGTGTCTGGTGGAATTGTATTGCAGA
TTTTGGCCTGTGCTCTTTATAACAACTGGTGGCCAATGTTAACAGTTCTGATGTACCTCA
TACTACCCATGCCGCTCATATTTTTCCTGGGCTCCGATTCTCCATCCATCATGTCGAATG
AGAATGATGGGTGGGTGAACTTCACCAAGTTCCTGACGGGCGCGTCCATCGTGGGCAGCA
TCGCCATCCCGTCGATCCTGAAGCACGCCGGCGTCATCGGATGGGGTGCGCTGACGATGG
AGCTGTCCTCCTTCGCCGTCTTCGGGCTGGCCATCGTGTGGTTCCTCCAGATGAACTCCG
AGGACGAGTACAGCGCCTTCTGATCTCCAGCGCTTCATCCTCTCCCGAACCTGTGATCTG
TGTGTTTCTAGTGGCACCCTGCTAGAAATAGGGATCAAACTTGTGAATATCTGCAGTACG
ATTTGGAGCATTGATGCGTTTGACCTTGTTTATATCAGTGAAGTGAGCCTTTTCAGTTGC
CTGTACAGATATCCTCTGCCTGCTAGCACTATGGATTTTTTGTTGGTAGGAAGTTGAACA
TCCATTGATGATCTCAAAATTAAGAAAAA

Homology of Contig U35_5829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55980.1	137	1e-81	protein\|vacuolar protein sorting 55 family protein, putative, expressed
Brachypodium v1_2	Bradi3g54470.1	141	2e-87
Arabidopsis v10	AT1G32410.1	140	2e-54	Vacuolar protein sorting 55 (VPS55) family protein \| chr1:11694398-11695297 FORWARD LENGTH=140