barSeed - Barley Seed Development Database

Probe CUST_36426_PI390587928

Source Contig U35_5831

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36426_PI390587928	Hv_44K_v2	ATAACCATGACTAAAGAGGCGGACAAGTTACGAGCTGATTTGGCAAATGCTGCAAACCGA	1112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361332	2003	2e-24	900 - 959	100	60 / 60	plus	ABC22036
MLOC	MLOC_14423.3	881	2e-24	151 - 210	100	60 / 60	minus	None
MLOC	MLOC_14423.2	897	2e-24	151 - 210	100	60 / 60	minus	None
MLOC	MLOC_14423.4	1094	2e-24	151 - 210	100	60 / 60	minus	None
MLOC	MLOC_14423.5	1113	2e-24	151 - 210	100	60 / 60	minus	None
MLOC	MLOC_14423.6	1104	2e-24	151 - 210	100	60 / 60	minus	None
MLOC	MLOC_14423.1	1602	2e-24	151 - 210	100	60 / 60	minus	None
JLOC1	JLOC1_9853.4	1037	8e-25	828 - 887	100	60 / 60	plus
JLOC1	JLOC1_9853.3	1041	8e-25	832 - 891	100	60 / 60	plus
JLOC1	JLOC1_9853.2	1032	8e-25	823 - 882	100	60 / 60	plus
JLOC1	JLOC1_9853.1	1040	8e-25	831 - 890	100	60 / 60	plus
Harvest21	ABC12830	1410	3e-25	1113 - 1172	100	60 / 60	plus
Harvest35	U35_5831	1411	3e-25	1113 - 1172	100	60 / 60	plus

Contig Sequence (1411 bp)

>U35_5831 1411 Hv_44K_v2
GAGCAAACACGAAGGTAAGCTGCTGTTCCTAGCTTCTATACATTTTTTTTGTGAATTAAA
AATAGTAAAACGTATCCCTGTATTGGTGCTTTTCCAAAATGCCAAATTTACGTATCCGTA
TCGACCCGATACTGATACACATATCCGTATTGGTGCATTTTAGCCTTAAGCTGGGCCTAG
GTTTAGATGGGTTTTTCTTTTCTTTTGAGGAAACATGATGTCTGTGTGAAAGGGGTTCAA
GCTTGTAGGTGTTGAAGATTGCTTTTTGTGCTTGCGCTCTACCCTTGGTAATGTGCATGA
CGTTTTCGTATCTGCACTTGGCCCACTATCACACTCCCCCCTATTGGTTCTTCCGACTTA
AACATAAGATTTGTTCCTTCTATTGGAAAGCGACCTCTTGGAACAATTCTTGAACAGAGA
AAAGCAAACTAGTCAACTTTGAAATCAACATCACCTACTTAAAATTGCTAATTATTACTG
GGCCCCTTTTTGACAAGAATTCCTATTTTAGGATAATGGCTCATCGTGGACACCTAGATG
GACTAATGCGCCATGGTGCATTCTCTGGAGCCGGCCTCTCTGGTCGCCAACCTTTGGAGC
CTTCTCCTGCCACCATACTGGAGATCCTGGAAAACAAGCTTGCCGTGCAGACCGCAGAGG
CAGAAAAACTTATCAGAGAAAATCAGCGATTGGCAGATAGCCATGCGGCCTTGAGAAAGG
ATATTATTGGCACTGAGACAGAAATGCAAATGATTCGCACCCACCTAGGTGATGTCCAGG
TAGAGACTGATATGCACATGAGAGATTTGGTGGAGAGAATCAGATTAATGGAGGCGGACA
TACGGGCTGGTGAGGCAGTGATGAAGGAACTTCACCAAGTGCATATGGAGGCAAAGCGAC
TTATTGCTGAAAGGCAGAGGCTTACTAATGATGTAGAGGCTGCGACTAAAGAACTACAGA
AGTACTCTGGTGACAATAGTAACCTTGCTGAATTGGTTGCGGAGCTAGATGGTCTACGGA
AAGAGCATCATGGTCTAAGATCTGCCTTCGAGTATGAGAAAAACACAAACATCAAGCAAG
TTGAGCAGATGCGGACCATGGAAATGAACTTGATAACCATGACTAAAGAGGCGGACAAGT
TACGAGCTGATTTGGCAAATGCTGCAAACCGAGCACATGCAGCACAGGTTACACCTCCAC
AGCCTGGGACAGCACAAGCTGCAGCGGCTTCAGCAGCCACAAATCCATATGCAAGTGCAT
ATACCAATCACCCCTCCGCATATCAGCAAGGAACTTCCCAAGCCGCGGCATACCAGCAAG
GAATCCCCCAAGCCGCGGCATACCAGCAAGGAACTTCCCAAGCCACGGCATACCAGCAAG
GAACTTCCCAAGCCGCGGCATACCAGCAAGG

Homology of Contig U35_5831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40300.1	407	1e-104	protein\|transglutaminase, putative, expressed
Brachypodium v1_2	Bradi5g13480.1	421	2e-124
Arabidopsis v10	None