barSeed - Barley Seed Development Database

Probe CUST_36422_PI390587928

Source Contig U35_5835

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36422_PI390587928	Hv_44K_v2	CAGACAGACTTGTGGCAGATTGTTATTTTCATGATGAAGTCTCATTATGTCAAATGTTCC	749	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.368	0.817	1.152	1.874	1.270	1.111
Raw	52.697	182.258	226.565	558.526	140.416	132.803

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72298.1	1755	2e-24	1606 - 1665	100	60 / 60	plus	ABC11775
JLOC1	JLOC1_48081.1	1755	8e-25	1606 - 1665	100	60 / 60	plus
Harvest21	ABC11775	830	3e-25	750 - 809	100	60 / 60	plus	ABC11775
Harvest35	U35_5835	830	3e-25	750 - 809	100	60 / 60	plus

Contig Sequence (830 bp)

>U35_5835 830 Hv_44K_v2
GCACAGCCAGGCCGGCTGAGGTGGAGATCATTCACCATGGCATGGTGGAGCTTCAGAACT
TCTTGCCCTTCCAAGGCCTGCTCTTCGCGACCACCACGTGGAAGAAGGAGATAGTAATGG
TGTACCCTCCACGCAAAATCTCCATGCCCTACTCTTCGCTAGCGGAAGCCGACCAGTCGT
TGATATGGCGGGAGTACCTCGTGGAGGTTACCGGGCGGATGATGCTCGTGGTGCAGCATG
GAACCGATGACAGGGCATGGCCAAAGTGTGCCTTCAAGATCTTTGAGGTGGACATCTGGG
GCCAGAAGCTGCTGCCCATCTGCAATCTTGGTGGCCGGGCTTTGTTTCTCAGCAGTGACA
GATGCCTGTGTGTCCCGACCATGAGCTTGCCATCTCTCTACAGCAATTCGGTATATTTCT
CTCTGCCATACAGCCCCGCTGTGGTGCAGTCTTTGTCGAGTGGGTTGTCAGAGGACCTAG
CGGCGCTGTGCCATATACACGACATGAAGAAGAAGACTCGCCCGTCTGTGCGACCTTTCA
CCATTGCTGATCATCTTCTCACGTATTGCAATCATCTGGAGTGGGCGAGGGGGCTCATGT
TTCATGAGTACCGCTATATACCAGAATCATTCGTGGAATTAAACAAGAAAATAAAGGCAC
ATTGTTCTCAAGTGCACATTCCGCGTACTGGAGCAGGAGGTTCAAAGGCCAAACTTTGCC
ATAATTAAGTAGGAAAGAAACTCTCTTTACAGACAGACTTGTGGCAGATTGTTATTTTCA
TGATGAAGTCTCATTATGTCAAATGTTCCAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_5835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None