barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_36421_PI390587928Hv_44K_v2GATGGGTTTATCAGTGTAATATACTTTGTACTGTACTACTTTTGAGGCTTATCAGTCTTC886GeneList: orangered4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.4815.4061.3290.7650.3920.628
Raw 75.134194.17039.14435.3345.45110.896



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64887.118272e-24123 - 18210060 / 60minus ABC06358 ABC12706
JLOC1JLOC1_42646.115738e-251392 - 145110060 / 60plus
Harvest35U35_58369863e-25887 - 94610060 / 60plus



Contig Sequence (986 bp)

>U35_5836 986 Hv_44K_v2
CGGGGGCGGCAGGGCTCCCGCGCTGCGACGTGTGCCAGGACAAGCCGGCCTTCGTCTTCT
GCGTGGAGGACAGGGCGCTCTTCTGCCGCGACTGCGACGACTCCATCCACGTCCAGGGCA
CGCTCTCCGCCAACCACCAACGCTACATCGCCACCGGCATCCGCGTCGGCTTCAGCTCCG
TCTGCAGCGCACACGCCGACAGCCACCCGCCGCCGCCGCCCTCCAAGCCCCCCAGGGCGG
CGCCGGTCTCGGCCGCGGCGCAGGAGGTGCCGTCGTCGCCGTTCATGCCGTCGTCCGGCT
GGGCCGTCGAGGACCTCCTGCAGTTCTCCGACTACGAGTCCAGCGACAAGAAGGGTTCTC
CGTCTCCTCTCGGGTTCAAGGAGCTGGAGTGGTTCGCCGACATCGACCTGTTCCACGACG
ACCAGGCGCCGGCATCCAAGTGGGGCAGAACCGCGGTGGAGGTCCCCGAGCTCTTCGCCT
CGCCGCCGCCGACGAGCAACGGGGGCTTCTACAAGACAGCCGGTGCGCGCCAGAGCAAGA
AGGCGAGGGTGGAGCTGCCCGACGACGACGACGAGGACTACCTCATCGTTCCCGATCTTG
GATGAGATATCTGAACTGAATGTATAGTTCGTATGTGTGATGTATTCCCTCCGTTCCAAA
GTACTTGTCGTGTCTTAGTTCAAGTTTGTCCAAAATACCTGGTTTCAGTTCAAATTTGTA
CTAAAAGCACGACAAATATTTTGGAACGGATGAAGTATGAGTAAACTAGTGATATGTATG
TGTGTATGTATGCAAAGGGATTCTGCAATCCTTTTGTGCCGATCGCTTGGTTGCCGTGGA
ACATATGAAGCTGCAGGGCGAATCGGGGAAATACTTTCACAAACGAGATGGGTTTATCAG
TGTAATATACTTTGTACTGTACTACTTTTGAGGCTTATCAGTCTTCCAAATTTTTACTGT
GATTTGATTTTAAAATTTTAAGAAAA



Homology of Contig U35_5836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi5g14280.12688e-76
Arabidopsis v10None