barSeed - Barley Seed Development Database

Probe CUST_36419_PI390587928

Source Contig U35_5838

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36419_PI390587928	Hv_44K_v2	AGAGCATGGCGATGTGCGTTGTACCTAAATTGTTTATGGGTGTTTTCTGAAGGACCAACT	1278	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.407	2.321	1.105	0.768	0.317	0.234
Raw	63.800	94.993	40.751	47.822	5.390	3.562

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26768.1	1014	2e-24	45 - 104	100	60 / 60	minus	ABC13672
JLOC1	JLOC1_18157.1	967	8e-25	822 - 881	100	60 / 60	plus
Harvest21	ABC13672	1355	3e-25	1265 - 1324	100	60 / 60	plus	ABC13672
Harvest35	U35_5838	1369	3e-25	1279 - 1338	100	60 / 60	plus

Contig Sequence (1369 bp)

>U35_5838 1369 Hv_44K_v2
GTCCGGCCTGAACACAAAAACGAAATGCCACTGCTACAGCTACAGCTGCCGACCGCGTGC
TGCGCCGCCGCGGCGTCGGCCCCCTTCTCGTTCTCGCGGCCGCCGCCCTCCCGGCTGCGC
GCGTCGCACGTCATCTTCGCCTTCCCTCGCCTGAGGAAATACGGCCGCCGGAGCCGCGAG
CCGGTGCCCACCACCCTCGACGACGACGAGGACGAGGAGGCGGATGAGGACGACGACGAC
GGCGTGGAGGAGGCGGTTGACGAGGACATCTTTCTCAAGAACCGGCCCAAGCCGGCCGGT
TTCGGCGTGGGGAAGACTTACACCACCGACGTTGAAGAGCAGCTTCTCCGGGAGATGGGC
CTCGGCGGCGCCGGGCGCAAGAGCAAATCGGCTCCGCCCAAGAGCGTCAAAACCAACGGC
TCGGCCACAGAAACCAGCGCAGATGTCAGTGATGATGGCGTTCATGTTCGTATTTGGAAC
CTCCCGAAAAAGAAGAACATACATAAGGACCTGAACCTGGCTTTCAAAGGGTTTCCTGGC
TTGGTAACTATAAACCCAGCAAACTCTGGAACTAAGAAGACCCGTGATCCTATTTGCAAG
GGTTTTGCATTTGTCAAACTGGAGTCAGTGGACGCTGCAACGAGGTTCGTTGAACTGTAT
TCTCGTAAAGCTGTGTCGTTTGGCAAGGTTGAGAAGCCAATCAAGTGCTGTATTGTTGAA
GGGCACGCCTCTACGGATCCTTCAGGTCCAGCATCCAGTAGTCAGGCACCAGGGTCGAAC
CCCCAACGGTTGGTAGCCGTAAGATGAGTGGCACAGTTAATCTGTCATCGATCCAGTTGC
CACTCGGTACTTCGACAGATGGAGAATTCCGGGAAGAAGGTTCGCTACATAGATATTGGC
ATGCTTCGCTCAAGATTGCGAGGATACAGACCGTTTGATCGGAATTCCCGATTTTGTAGA
TGATATCAAGCATTGACATTAGCAGGAAACCCTTTCTCCAATGGGTTTATTTAGAAGATA
GGCAGGGATTAGACTCAGTTTTTCAAGGTATGCGGTGGTTTTAGTTAAATTTACGTGCCC
ATATGAAGAGATTGTGTCTGAATTAGGTCCTACTGTTTCGGAGGAGGATTTGAATCTGAA
TCTGCGACGTTTAAACCCCGAGATTAAAGCTGCTTCAAAGATGATTGTGATACCATGTCC
CGGTGATAGATGGGTTGTGGGGTAAAAACGTTGAGCTGTTTTATCAATCAAGTATGTGTT
GCTGAAAATCGCCCAAGTAGAGCATGGCGATGTGCGTTGTACCTAAATTGTTTATGGGTG
TTTTCTGAAGGACCAACTNGGAAGCGCACCAAGGCACTAGCCAAGAGGC

Homology of Contig U35_5838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22070.1	281	2e-81	protein\|expressed protein
Brachypodium v1_2	Bradi3g10760.1	260	2e-90
Arabidopsis v10	None