barSeed - Barley Seed Development Database

Probe CUST_36414_PI390587928

Source Contig U35_5843

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36414_PI390587928	Hv_44K_v2	GGGGTGTAATGTCACTGTGGACCAAATTAGTCAAACTATTTAGAGTGATGATTATTGAAA	1233	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.723	1.552	2.087	2.072	0.860	0.719
Raw	214.832	749.295	844.222	1219.105	195.597	173.240

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3789.2	2274	2e-23	76 - 133	100	58 / 58	minus	ABC17743
MLOC	MLOC_3789.1	2142	2e-23	76 - 133	100	58 / 58	minus	ABC17743
JLOC1	JLOC1_2280.1	2109	1e-23	76 - 133	100	58 / 58	minus
Harvest21	ABC17743	1299	6e-22	1234 - 1287	100	54 / 54	plus	ABC17743
Harvest35	U35_5843	1307	3e-25	1234 - 1293	100	60 / 60	plus

Contig Sequence (1307 bp)

>U35_5843 1307 Hv_44K_v2
GCCAAGCCCAAGGTCCCGAAGCTGGACAAGGCGGCGGCCACCGCCAAGCCCAAGAGCGCC
GATTCTGCCAAGTCCACCAAGGCGGGCGCTGCCAAGCCGGTGAAATCTGAGGGCGGAGCT
CCCAAGGCCAAGAAGCCGTCCAATTCGACGGCGAGTTCGACCAAGTCGAGCAAGAAAGCG
CAGGTTGCCGCCGACGGAAAGGTGGATTCGACTAAGAAAGCGAAGGTCGTTGCCGCCGAC
GGGAAGGTGAAGGCGAATTCGACCGTGGCCAGCAAGGAGGTGACCGGGGTGGAGGAGGAC
GTGGTGTTCGCGGAGGAGGCGGAGGGGACGGAGGACCTCATGTCGGAGTTCCGGGGCCTC
CCGGCGCGGCTGCATCAGACGCTCATGCCGGACCTGGCTCGGCTGTCGTACACGTCCAAG
GCGTACCTTTCGGCCGCCAATGCCGGGATCGCTGGCGGTGTGCGGCCGGTCCTGGGTGGC
CGGTGGGGGGCGGCGGCGGCCTCCGCGGCGTCGGTGGCCCTGCTGCTGCTTCCCCTGTGC
ATGCTCACCGCGCTGGTGCGGCGCATGGGCCCGTACCTGCCGCTCCTCCACCGTGCCCTG
CTGCTCTCGCAGGCGTACCTCGCCATCTACTTCGGCACGCTCGCGCTCGCGGCCGCCGCG
ACCGGGCTGGAGCCGCTCCGCTTCTTCCACGCCGCTTCGCCCGCGGCCTACGCCTGGACG
CAGGCCGCGCAGTCGCTCGGCTTCATGGGCTACCTCGTGCTCCAGATGGTGGACCTCGTC
GCCATCTTCTCCGGGGCCGCCTCGCCGGAGGAGGAGGAGGGCGGAGCGGACGCCACCAAG
GCGCTCGGCCTGGCGCAGATGGTGGTGGGGCTGGCGGTCGGCCTCCACTACTACGCCGCG
GTGTTCCACCGCGCCGCCGCCGGCGAGGCCCCGCGCGCGAACTGGCGCGTGTACGCAGTG
TATGCCGCGTGCTTCGTCATCATCTGCGCGTGCGCGCGAGCGGAGAAGAGGAAGAAGGCC
TACCTCGCCGGCGCCGAGGAGTGGAAGAAGAGCTGAGGGATTGATGTTTTTTAGGGGCTT
ATGTGCAAACATTAAAATATAGTGAAAGCCAAAGGGCTTGGGTATAAGATGGGATTAGGG
GGGAAATTGGAAGATCAAGGAGAAGACGAGGAAAAGCAAAACTATTCTTGTTCGTTTTTC
CCTTTCTCATTTTGAATTGGTTTGAGTACAGATGGGGTGTAATGTCACTGTGGACCAAAT
TAGTCAAACTATTTAGAGTGATGATTATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_5843 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31760.1	483	5e-88	protein\|expressed protein
Brachypodium v1_2	Bradi3g35640.1	469	5e-101
Arabidopsis v10	None