barSeed - Barley Seed Development Database

Probe CUST_36413_PI390587928

Source Contig U35_5844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36413_PI390587928	Hv_44K_v2	TTTTGTATGATTCTGCACACACATTGGTCTTCTGCTTCGCCGGGAACTCGATTCAGATGT	820	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.521	3.208	1.321	0.677	0.234	0.198
Raw	128.559	196.845	65.808	53.301	5.729	5.167

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51513.3	2284	2e-24	22 - 81	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.2	3072	2e-24	756 - 815	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.1	3887	2e-24	917 - 976	100	60 / 60	minus	ABC12809
MLOC	MLOC_51513.4	2106	7e-23	1 - 57	100	57 / 57	minus	ABC12809
JLOC1	JLOC1_32916.2	2353	8e-25	2204 - 2263	100	60 / 60	plus
JLOC1	JLOC1_32916.1	2791	8e-25	2642 - 2701	100	60 / 60	plus
JLOC1	JLOC1_32915.1	2821	8e-25	909 - 968	100	60 / 60	minus
Harvest21	ABC12809	912	3e-25	33 - 92	100	60 / 60	minus	ABC12809
Harvest35	U35_5844	912	3e-25	821 - 880	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_5844 912 Hv_44K_v2
CGAGCCGGACCCGCAGGTGTACAGCATCCTCGCCAAGGGCCACGTGCGCGCGCAGCAGCC
CGGCAAGGCGGAGGAGCTCCTGGAGCGGATGTGCCGCCTCGGCGTCCGCCCCAACGTCGT
CACCTTCACCACCGTCATCAGCGGCTGGTGCAGCGTCGCCGACATGGACAACGCCACCAG
GGTGTACAGGAAGATGCGGGACGCCGGCGTGCGCCCAAACCTCAGGACGTTCGAGACGCT
CATCTGGGGGTACAGCGAGCAGAAGCAGCCGTGGAAGGCCGAGGAGGTCCTCCAGATGAT
GCAGGAGGCGGGCATCAGGCCGAAGCAGAGCACCTACAGCCTCGTCGCCGATGCGTGGAA
GGCCGTCGGCCTGGTCAAGAACGCCAACCGCACCGTCGGTTCGCCCGATGACCGTCGTCG
CCCCAACGCGAACGATCATGACGAGCCGGACAGCCGTCCACACGACGACGATGACAAGCT
GCAGAGATCAAGAAGAGGAAATGAGCAGGCAACGAGTGATCCATCATCACATGTCAGTTT
CGTGCAGGTGACGAGCGCGCTAGGGACATGCAGGGCTGGAGAGTTTGCATCATCGGCGCC
CTCGTCGTCATCGCTGTGGCGATCGTGTCAGCTCCGACTGCGATCCTCAGGGTTTTGCAG
GAATCAAAGGCAGAATCAGGGTGGGCTGTACAGTCACAGCATCGGCTCAATCAAGATGGT
CTTCCTCAGTTAAGAGGCGGCCATGTTTACTGTTCAGCACATGTACACTACCTGTAAAAC
CCAATTCTTCCCCAATCTCCTGACCGAAGATGCTGGTCATTTTTGTATGATTCTGCACAC
ACATTGGTCTTCTGCTTCGCCGGGAACTCGATTCAGATGTCTCACCACTCGCATTCAAAA
AAAAAAAAAAAA

Homology of Contig U35_5844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12810.2	637	2e-88	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g07630.1	580	8e-107
Arabidopsis v10	None