barSeed - Barley Seed Development Database

Probe CUST_36411_PI390587928

Source Contig U35_5846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36411_PI390587928	Hv_44K_v2	GATAGAAGCCAATCGTCAGACAGGTTCAGAGTCGTTGATGCAATTTTAATCTCACAGTCG	800	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.035	5.690	1.310	0.627	0.685	0.638
Raw	71.539	96.675	18.313	13.670	2.886	3.972

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2675.1	1400	7e-23	28 - 84	100	57 / 57	minus	ABC12833
JLOC1	JLOC1_1596.1	967	4e-23	857 - 913	100	57 / 57	plus
Harvest21	ABC12833	863	3e-25	801 - 860	100	60 / 60	plus	ABC12833
Harvest35	U35_5846	863	3e-25	801 - 860	100	60 / 60	plus

Contig Sequence (863 bp)

>U35_5846 863 Hv_44K_v2
CAACCGGCAGCAGCCTCCGCTGCGAGGGGGCCCGTGGGCGCGCGATGCACCAGCTTCCTC
TCGCCGCGCGGCCGCCGGCGCCGCGGTCTCACTGTTCCGGGAGTAGGATGGCGTGCCTCT
CCAGTCTGAAGCAGGCGTCGGCCTCTCTCGCCGTGGCCGCAAGACGGTGCGCGGCCGCGC
CTCTCGTGGCTGCGTCGCTCCTCCTCGCCGCCGCGGCTGCGTCTCCTGTCATGCCTGCCG
GCACCCCACAAGCGTTTGCACAATCCCAAGGCGCGGCGCTGTTCCGTAAGGCGTGCATCG
GGTGCCACGACACGGGAGGGAACATCCTACAGCCAGGTGCCACGCTCTCCATGAAGGATC
TTGAGAGAAATGGAGTTGCCACGGAGGAAGATATATACAACATCACTTATTACGGGAAGG
GAAGGATGCCGGGTTATGGGGAGAAATGCACGCCGAGAGGGCAGTGCACCTTCGGCCCCA
GGCTGCCTGAAGAGGATATCAAGATGCTTGCAGCATTTGTCAAATCTCAAGCAGAGAACG
GGTGGCCAAAGGTCGACGGTGATGTCGAGTGATTCGATTACGGTTGAGCACGAGGTGTTA
CCTCCATTTCGTGAGGAGGCTGAAAACATAATTGTTGATGAGGTTAATAGAGGTGTTTGG
TTTACTGGACAGTAACGCAAACGGTAAAGGTATCACGTGGCGTTGGGATCGATGGTGTAA
CGATCCATGTGCTGTTTTGTTTGGCCCATGCTTGTAACGCTATCAATTTACTTAAGGGAA
ACACTAGCTACCATACGTCTGATAGAAGCCAATCGTCAGACAGGTTCAGAGTCGTTGATG
CAATTTTAATCTCACAGTCGAAA

Homology of Contig U35_5846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38000.1	189	4e-67	protein\|cytochrome c, putative, expressed
Brachypodium v1_2	Bradi1g24320.2	112	1e-64
Arabidopsis v10	AT5G45040.1	175	5e-52	Cytochrome c \| chr5:18175566-18176851 REVERSE LENGTH=175