barSeed - Barley Seed Development Database

Probe CUST_36410_PI390587928

Source Contig U35_5847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36410_PI390587928	Hv_44K_v2	CTGCGACACAAACTAAAGAGGTTGAAGATTTTGCCAAGTTGTCATTTGAGAAAAACGAAG	848	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.572	2.033	1.278	0.857	0.702	0.495
Raw	1173.611	1343.167	786.639	769.974	238.987	182.862

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368023	2028	2e-24	879 - 938	100	60 / 60	plus	ABC12862
MLOC	MLOC_58322.4	1008	2e-24	780 - 839	100	60 / 60	minus	ABC12862
MLOC	MLOC_58322.3	1845	2e-24	1467 - 1526	100	60 / 60	minus	ABC12862
JLOC1	JLOC1_37883.1	2605	8e-25	206 - 265	100	60 / 60	plus
Harvest21	ABC12819	962	3e-25	849 - 908	100	60 / 60	plus
Harvest35	U35_5847	962	3e-25	849 - 908	100	60 / 60	plus

Contig Sequence (962 bp)

>U35_5847 962 Hv_44K_v2
TTAAACCCTAGAAGTCGAGCCTCCCCTTGCCATCGCCGCCGCAGCCACCATGGGCTCCGC
CAAGTCCTCCAAGTCCTCCAAGAAGCGGAAACCCGTCGCCCCGCCGCCAGAGTCGGACTC
CGAGCCGGAGCAGACGGTTGACGAGACCGCCGCTGCCGAGGAATTCAACCAAGAGGAGCA
GCCGCAGTCGGACGCGGGAGACGAGCGCCATGAACATGACAAGGAGGTGCAGGAGACGGG
AAAGGAGAAGAAGAAGAAGAAGGACAAGGAGGGCTCGGGTATCCTCACCAGCATGCTCTT
CTCGGAGCTCCCCATCTCCGAGCTCACCGCCAAGGCCATCAGGGAGATGAACTACACCCA
CCTCGCCCAGATTCAAGCTCGGTCGATACCTCATCTGTTGGAAGGAAGGGATGTGATGGG
AGCTGCCAAGACTGGCTCAGGGAAGACACTTGCGTTCCTCATACCGGCAATCGAGCTCCT
CTATAACTTGCATTTCTCACCGAGGAATGGCACAGGAGTTATTGTTGTTTGCCCTACAAG
GGAGCTTGCCATACAGACACACAATGTTGCCAAGGAATTGATGAAGTATCACTCACAAAC
CCTTGGATATGTAATTGGTGGCAATGGCCGGAGAACTGAAGCTGACCAGCTTGCAAAGGG
GGTCAATTTGTTAGTAGCAACACCAGGCAGGCTGTTGGACCATCTGCAAAACACCAAGGG
TTTCATATATAAGAGACTAAAGTGTCTTATAATTGATGAAGCTGATCGCATTCTTGAGCA
GAACTTTGAGGAAGATATGAAACAAATATTTAAACGCCTTCCCCAGAATCGGCAGACAGT
TCTTTTTTCTGCGACACAAACTAAAGAGGTTGAAGATTTTGCCAAGTTGTCATTTGAGAA
AAACGAAGAAAGGAAAGAAAAACCTGTTTATATCTCAGTTGATGATGGTAAATCAAATGC
TA

Homology of Contig U35_5847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58810.1	591	5e-139	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g41160.1	580	4e-162
Arabidopsis v10	AT3G18600.1	568	1e-98	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:6399724-6403007 REVERSE LENGTH=568