- Probe CUST_36409_PI390587928
- Source Contig U35_1819
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36409_PI390587928 | Hv_44K_v2 | GTAACACTCATGAGATGTATGCTCGGCTCAACAGAGATAAGATTGGTTGGTTCATCCTCG | 436 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.919 | 1.927 | 1.716 | 1.000 | 0.261 | 0.409 |
| Raw | 27.242 | 89.269 | 67.625 | 65.338 | 4.439 | 9.611 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63699.1 | 438 | 2e-24 | 29 - 88 | 100 | 60 / 60 | minus | ABC34516 |
| JLOC1 | JLOC1_41753.1 | 2225 | 8e-25 | 1816 - 1875 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04884 | 1508 | 3e-25 | 1429 - 1488 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43891 | 383 | 6e-22 | 17 - 70 | 100 | 54 / 54 | minus | |
| Harvest35 | U35_1819 | 516 | 3e-25 | 437 - 496 | 100 | 60 / 60 | plus |
Contig Sequence (516 bp)
>U35_1819 516 Hv_44K_v2 GCACGAGGGAAGGAGAACGTCGCCGACGCGCAGGCCACCTTCCTCGCCCGGTGCAAGGGC AACTCCGAGGCCACGCTCGGCAAGTACGGCGGCGCCGCCGCTGGCGGGGACGCCGCCGCC TCCGAGAGCTTGCACGTCGCGGGGTACAAGTACTAAGGCCACCGTCGCCCCCGGCCGCGC CATTCCCGGACCTTGGACCTTGGTGCAACCCATGTGTGCGTGCGCACGACGCGGCACATG GCTTGCGCCGAGATTCGTGCGTGCGTGCAGATATATATATATATATATATGCTCTTCCCG CCGTGTACTTAAATTCTCTCTGCCTCACCTTTGCTCCTATTTAACCAGAACTACTAATGA TATGTAAGTGGTATATGAAAGTGTGAATGCAACGCTTTTATATGTTTGAGCTGTTTCAAT GGAAAAATGAGTACCAGTAACACTCATGAGATGTATGCTCGGCTCAACAGAGATAAGATT GGTTGGTTCATCCTCGAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_1819 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |