barSeed - Barley Seed Development Database

Probe CUST_36408_PI390587928

Source Contig U35_1820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36408_PI390587928	Hv_44K_v2	CAACGCTTTTATATGTTTGAGCTTGTTTCATTGGAAAAATGAGTACCAGTAACACTCATG	1394	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63699.1	438	2e-24	77 - 136	100	60 / 60	minus	ABC34516
JLOC1	JLOC1_41753.1	2225	8e-25	1864 - 1923	100	60 / 60	minus
Harvest21	ABC43891	383	3e-25	59 - 118	100	60 / 60	minus
Harvest21	ABC04884	1508	3e-25	1381 - 1440	100	60 / 60	plus
Harvest35	U35_1820	1470	3e-25	1395 - 1454	100	60 / 60	plus
Harvest35	U35_1819	516	2e-21	390 - 448	97	58 / 60	plus

Contig Sequence (1470 bp)

>U35_1820 1470 Hv_44K_v2
CAAAAAGCGCGAGCACAGCAGCCCAGCGTTTGGATTTTGCAGCCGGTCCCGGAGCCTCCT
GACCGACACGGTCGCCGCCATGTCTGCCTTCGTCGGGAAATACGCAGATGAGCTGATGAA
GACGGCCAAGTACATCGCGACGCCGGGGAAGGGGATCCTGGCGGCGGACGAGTCGACGGG
CACCATCGGGAAGCGGCTGGCCAGCATCAACGTGGAGAACGTGGAGTCCAACCGGCAGGC
GCTGCGGGAGATGCTCTTCACGGCGCCGGGCGCGCTCGAGTACCTCTCCGGCGTCATCCT
CTTCGAGGAGACGCTCTACCAGACGGCCGCCGACGGCACCCCGTTCGTCGACATCCTCAA
GGCCGGCAACGTCATCCCGGGCATCAAGGTCGACAAGGGCACCGTCGACATCGCCGGCAC
CGACGGCGAGACCACCACTCAGGGCCTCGACTCCCTCGGCGCCCGCTGCGCCAAGTACTA
CGAGGCCGGCGCGCGCTTCGCCAAGTGGCGCGCCGTGCTCAAGATCGGCCCCGGCGCCGA
GCCGTCCGAGCTCGCCGTCAAGCAGAACGCCGAGGGGCTGGCGCGCTACGCGCTCATCTG
CCAGGAAAACGGGCTGGTCCCCATCGTGGAGCCCGAGATCCTCACCGACGGCGCGCACGA
CATCAAGGCATGCGCCGCCGCCACCGAGCGCGTCCTCGCCGCCGTCTACAAGTCGCTCAA
CGACCACAAGGTGCTCCTCGAGGGCACCCTCCTCAAGCCCAACATGGTCACCCCCGGCTC
CGACAGCCCCAAGGTTGGCGCGGAGGTGATAGCGGAGTACACGGTGGCGGCGCTGCGGCG
CACCGTGCCGCCGGCGGTGCCCGGGGTGGTGTTCCTGTCGGGCGGGCAGAGCGAGGAGCA
GGCCACGCAGAACCTGGACGCCATGAACAAGCTGCCGGTGCTCAAGCCGTGGACGCTCAC
CTTCTCCTTCGGCCGGGCGCTGCAGCAGAGCACCATCAAGAAGTGGGCCGGCAAGAAGGA
GAACGTCGCCGACGCGCAGGCCACCTTCCTCGCCCGGTGCAAGGGCAACTCCGAGGCCAC
GCTCGGCAAGTACGGCGGCGCCGCCGCTGGCGGGGACGCCGCCGCCTCCGAGAGCTTGCA
CGTCGCGGGGTACAAGTACTAAGGCCACCGTCGCCCCCGGCCGCGCCATTCCCGGACCTT
GGACCTTGGTGCAACCCATGTGTGCGTGCGCACGACGCGGCACATGGCTTGCGCCGAGAT
TCGTGCGTGCGTGCAGATATATATATATATGCTATTCCCTTCCCGCCGTGTACTTAAATT
CTCTCTGCCTCACCTTTGCTCCTATTTAACCAGAACTACTAATGATATGTAAGTGGTATA
TGAAAGTGTGAATGCAACGCTTTTATATGTTTGAGCTTGTTTCATTGGAAAAATGAGTAC
CAGTAACACTCATGAAAAAAAAAAAAAAAA

Homology of Contig U35_1820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g40640.2	359	protein\|fructose-bisphospate aldolase isozyme, putative, expressed
Brachypodium v1_2	Bradi1g36260.1	361
Arabidopsis v10	AT4G26530.1	358	Aldolase superfamily protein \| chr4:13391566-13392937 FORWARD LENGTH=358