barSeed - Barley Seed Development Database

Probe CUST_36407_PI390587928

Source Contig U35_1821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36407_PI390587928	Hv_44K_v2	CAGTTCTGTGTGATTGTAAACCTTCAGAGTTGTTGAATGTTTACCAAATGTTTCTGTGAT	1685	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365212	1775	2e-24	1676 - 1735	100	60 / 60	plus	ABC04928 ABC06870 ABC48407
MLOC	MLOC_78233.2	4088	2e-24	2051 - 2110	100	60 / 60	plus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.1	3391	2e-24	1214 - 1273	100	60 / 60	plus	ABC04928 ABC22963 ABC48407
MLOC	MLOC_78233.3	3631	2e-24	1213 - 1272	100	60 / 60	plus	ABC04928 ABC22963 ABC48407
JLOC1	JLOC1_52140.2	3666	8e-25	1496 - 1555	100	60 / 60	plus
JLOC1	JLOC1_52140.1	3383	8e-25	1213 - 1272	100	60 / 60	plus
Harvest21	ABC04928	1819	3e-25	1671 - 1730	100	60 / 60	plus	ABC04928
Harvest21	ABC48407	368	1e-23	48 - 107	98	59 / 60	minus	ABC48407
Harvest35	U35_1821	1846	3e-25	1686 - 1745	100	60 / 60	plus

Contig Sequence (1846 bp)

>U35_1821 1846 Hv_44K_v2
TCCGAACAACCGGAGGTTTGCGTCGCCCTCGATCCCCGGACAAAAATCCCCCTTTTTTAC
CCCTGCCTTGCCGTTTCTGGTCGCGAGAGCCTCGCCACCACCCCCCACCCCGCCCCCGGG
TCCGATCTCCCTCGCGGTCTGTCCCTTTCGCCCCGGCTTCCTATTTCCTTGCGGTTGCGG
AGGTTGTTGGAGCGGGGGGAAGGAGGAAAAGAAACAAGCGCCGCGCCGCCGCCGCAGCCA
TGAACGCGCTCGCCGCGACCAGCCGCAACTTCCGCCAGGCCGCGCGGCTGCTCGGCCTCG
ACTCCAAGCTCGAGAAGAGCCTCCTCATCCCCTTCCGCGAGATCAAGGTCGAATGCACCA
TCCCCAAGGACGACGGCACGCTGGCCTCCTTCGTGGGCTTCCGCGTGCAGCATGACAATG
CCCGCGGGCCCATGAAAGGTGGCATCCGCTACCACCCCGAGGTTGATCCAGATGAAGTAA
ATGCACTTGCTCAACTGATGACATGGAAGACTGCTGTTGCGGCGGTACCATATGGTGGAG
CAAAGGGGGGAATAGGCTGCTCTCCTGGTGATTTAAGCAGGAGTGAGTTGGAGCGTCTGA
CGCGTGTATTTACTCAGAAAATTCATGACCTTATCGGAACCCATACCGATATTCCAGCTC
CAGACATGGGAACTAATTCACAGACCATGGCATGGATCTTTGACGAGTACTCAAAATTCC
ATGGTCACTCCCCAGCTGTTGTCACAGGGAAGCCCATAGATCTTGGTGGATCATTAGGTA
GGGATGCTGCCACTGGGCGGGGTGTAATGTATGCTACTGAGGCTCTCCTGGCTGAATACG
GAAAGTCTATTTCTGGATCAACCTTTGTTATTCAGGGATTCGGTAATGTTGGTTCATGGG
CTGCACAACTCATCCATGAGAAAGGTGGTAAGGTAATTGCACTTGGAGATGTATCAGGCA
CAATCAGAAACAAAGCAGGGATAGACGTACCTGCTCTGATGAAGCACAGAAATGAGGGTG
GTCAGTTGAAAGACTTTCATGGTGCGGAAGTCATGGATTCCTCAGAGTTGCTGGTGCATG
AATGCGATGTCCTCCTCCCATGCGCCTTAGGTGGAGTTCTTAACAAAGATAATGCACCTG
ATGTGAAGGCCAAATTTATAATTGAAGCTGCTAATCATCCAACTGATCCAGAAGCTGATG
AGATCCTTACCAAGAAGGGGGTGGTCGTGTTACCTGATATCTATGCTAATGCTGGTGGTG
TGATCGTTAGTTATTTTGAGTGGGTTCAGAACATTCAAGGCTTCATGTGGGAAGAAGAAA
AGGTGAACATGGAGCTCCACAAGTATATGAACAGCGCATTCCAGCACATCAAGGCCATGT
GCAAGTCTCAAGATTGCAGCCTTAGGATGGGAGCATTCACCTTGGGAGTGAACCGGGTTG
CACGCGCCACCATCTTGAGGGGCTGGGAGGCATGATGAGTTCCATATTCCTCATCCAATA
ATCCATGTCCCAACACCGTGGTGGATGACAGTTCTTATATCCACCATCATTGGTTTGGTA
AATTCATCATAAGTTGCCGGCATGGGAGGAGTCCAGTTGAAATAATTTTCGGTGTACATG
ACAGATGATGGGTTTGGTCTTTATGTTAGCTAATTATCTGCCCTGGGTTGCCAAGTATGG
CGATCCAGTTCTGTGTGATTGTAAACCTTCAGAGTTGTTGAATGTTTACCAAATGTTTCT
GTGATTTAATATCAAAAGGGTTATTTTGGCCTCATTGGTTTCTAAAAAAAAAAAAAAAAA
TTTGGTCTCAGATTTGATGGCCCCAAATGTAAGAGATTATTTTCGC

Homology of Contig U35_1821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g43470.1	412	protein\|glutamate dehydrogenase protein, putative, expressed
Brachypodium v1_2	Bradi5g17330.1	412
Arabidopsis v10	AT5G07440.1	411	\| Symbols: GDH2 \| glutamate dehydrogenase 2 \| chr5:2356153-2358012 FORWARD LENGTH=411