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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_36401_PI390587928Hv_44K_v2TGCAATAATGTTATCACTGTATTGTTGTCGATGAATGCAATAAAAGATGGTGCTCCTTGT2612GeneList: yellowgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1642.0581.9431.0550.4080.552
Raw 345.8181020.552779.146693.54088.624136.596



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37376118402e-241781 - 184010060 / 60plus ABC04459 ABC39252
MLOCMLOC_13105.17962e-24117 - 17610060 / 60minus ABC04459 ABC39252
JLOC1JLOC1_8840.17478e-2553 - 11210060 / 60minus
Harvest21ABC0445926903e-252611 - 267010060 / 60plusABC04459
Harvest21ABC044604846e-2219 - 789758 / 60minus
Harvest35U35_182726923e-252613 - 267210060 / 60plus



Contig Sequence (2692 bp)

>U35_1827 2692 Hv_44K_v2
ATCCCCCTCTCCGGCGAGGGCACCGCACCATCTTATATCATTAGATTAGTACTGGTTCCA
GTTACCGGCACGCAAAGCACTCTCTATCGATCACTCTATCATATACTACCATCGTCCGTT
ATCTATCAATCGCTCGCTACTTGCTAGCTCCGGCCGTATCGAAGCTAGAAGGGGTGGTCG
GAGATGACGGTGACGCCGCAGATCACGGTGGGCGACGGGAGGCTGGCGGTGCGCGGCCGG
ACGGTGCTGTCCGGCGTGCCGGACAACGTCACCGCGGCGCACGCTGCCGGGGCCGGGCTT
GTCGACGGGGCCTTCGTCGGCGCCACGGCCGCCGAGGCCAAGAGCCACCACGTCTTCACC
TTCGGGACTCTCCGAGATTGCCGATTCATGTGTCTGTTCCGGTTCAAGCTGTGGTGGATG
ACGCAGCGGATGGGCACCTCCGGCCGCGACGTCCCGCTGGAGACCCAGTTCATCCTCATC
GAGGTCCCTGCCGCCGCCGGCAACGACGACGGCGACTCCTCGGACGGCGACAGCGAGCCC
GTGTACCTGGTGATGCTGCCGCTGCTGGAGGGGCAGTTCCGCACGGTGCTCCAGGGCAAC
GACCAAGACGAGCTCCAGATCTGCATCGAGAGCGGGGACAAGGCGGTTGAGACGGAGCAG
GGCATGAACAATGTGTACGTCCACGCCGGCACCAACCCCTTCGACACCATCACCCAGGCC
GTCAAGCTGTCGAGAAGCACACGCAGACGTTTCACCACAGGGAGAAGAAAACGGTGCCGT
CGTTTGTGGACTGGTTTGGGTGGTGCACGTGGGACGCCTTCTACACGGACGTGACGGCCG
ACGGCGTCAAGCAGGGGCTCCGCAGCCTGGCCGAGGGCGGCGCGCCGCCGCGGTTCCTCA
TCATCGACGACGGCTGGCAGCAGATCGGCAGCGAGAACAAGGATGACCCCGGCGTCGCCG
TCCAGGAAGGCGCGCAGTTCGCGAGCCGGCTCACCGGCATCAGGGAGAACACCAAGTTCC
AGAGCGAGCATAACCAGGAGGAGACCCCGGGGCTGAAGCGGCTGGTGGACGAGACCAAGA
AGGAGCACGGCGTCAAGAGCGTCTACGTCTGGCACGCCATGGCCGGCTACTGGGGCGGCG
TCAAGCCGTCGGCGGCCGGGATGGAGCACTACGAGCCGGCGCTGGCGTACCCGGTGCAGT
CGCCGGGCGTCACGGGCAACCAGCCGGACATCGTCATGGACTCGCTCTCCGTGCTCGGCC
TCGGCCTCGTGCACCCGCGCAGGGTCCACCGCTTCTACGACGAGCTCCACGCCTACCTGG
CCGCCTGCGGCGTCGACGGCGTCAAGGTGGACGTGCAGAACATCGTGGAGACCCTCGGCG
CCGGGCACGGCGGCCGCGTCGCGCTCACCCGCGCCTACCACCGCGCGCTCGAGGCCTCCG
TCGCGCGCAACTTCCCGGACAACGGCTGCATCTCGTGCATGTGCCACAACACCGACATGC
TCTACAGCGCCAAGCAGACCGCCGTCGTGCGCGCCTCCGACGACTTCTACCCGCGCGACC
CGGCGTCGCACACCGTCCACATCTCCTCCGTCGCCTACAACACGCTCTTCCTCGGCGAGT
TCATGCAGCCCGACTGGGACATGTTCCATAGCCTGCACCCGGCGGCGGAGTACCACGGCG
CGGCGAGGGCCATCGGCGGCTGCCCGATCTATGTCAGCGACAAGCCGGGGAACCACAACT
TCGACCTTCTCAGGAAGCTCGTGCTCCCCGACGGCTCCGTGCTCCGCGCGCAGCTCCCCG
GCAGGCCCACGCGCGACTGCCTCTTCTCCGACCCGGCGCGCGACGGTGCCAGCTTGCTCA
AGATATGGAACATGAACAAGTGCGCCGGCGTGGTGGGCGTGTTCAACTGCCAGGGCGCCG
GGTGGTGCCGCGTCGCCAAGAAGACGAGGATCCACGACGAGGCGCCCGGCACGCTCACCG
GCTCGGTGCGCGCCGAGGACGTGGAGGCCATCGCCCAGGCCGCCGGCACCGGCGACTGGG
GCGGCGAGGCCGTGGTGTACGCGCACCGGGCGGGGGAGCTCGTGCGGCTGCCCCGGGGCG
CCACGCTGCCGGTGACGCTGAAGAGGCTGGAGTACGAGCTGTTCCACGTCTGCCCCGTCC
GCGCCGTGGCGCCGGGCGTCTCGTTCGCGCCCATCGGGCTGCTCCACATGTTCAACGCCG
GCGGCGCCGTCGAGGAATGCACCGTCGAGACGGGCGAGGACGGCAATGCCGTCGTGGGGC
TCAGGGTGCGCGGCTGCGGCCGGTTCGGCGCCTACTGCTCGCGGAGGCCGGCGAAATGCT
CCGTCGACTCGGCTGACGTGGAGTTCACCTACGACTCCGACACCGGGCTCGTCACCGCCG
ACGTGCCGGTCCCGGAGAAGGAGATGTACCGGTGTGCGCTCGAGATCCGGGTCTAGGCTG
CCATGCTTGTGTTCACGATCACGGGGATGGTTGGGGCGGTCTCAGCCGTTGGATTATTTC
CATTGTTCGTGCTTATTGGTTGAGAGAGATTGATTGAGAGATGAGCGATTGTCATGTAGA
GAGATTGTGCTTTGCTCTATCACTGTCGCGTATGCAATAATGTTATCACTGTATTGTTGT
CGATGAATGCAATAAAAGATGGTGCTCCTTGTAAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_1827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g10840.17640.0protein|uncharacterized glycosyltransferase, putative, expressed
Brachypodium v1_2Bradi1g54210.17610.0
Arabidopsis v10AT3G57520.17730.0| Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773