barSeed - Barley Seed Development Database

Probe CUST_363_PI390587928

Source Contig U35_9363

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_363_PI390587928	Hv_44K_v2	TGGTGACTGAATCAAAGCTTCGAGGGAATTGGACGCTGATGTATTTTGGCTACACATCAT	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58166.3	1376	2e-24	502 - 561	100	60 / 60	plus	ABC46559
MLOC	MLOC_58166.1	1738	2e-24	1016 - 1075	100	60 / 60	minus	ABC46559
MLOC	MLOC_58166.2	1752	2e-24	1030 - 1089	100	60 / 60	minus	ABC46559
JLOC1	JLOC1_37762.2	1584	8e-25	522 - 581	100	60 / 60	plus
JLOC1	JLOC1_37762.1	1598	8e-25	522 - 581	100	60 / 60	plus
Harvest21	ABC19866	570	3e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_9363	572	3e-25	510 - 569	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_9363 572 Hv_44K_v2
CGAGACCCCCCAAAAACCTGCGACGGGGGGCATTCCTCCCCTCCCACGGTTCCACTCCAT
CCCCCCCGGCGCCCCCGACCCCGCCTCGCTCCGGAGAGCCTCCTCCCCGGCCACCGCCAT
GCTGCCCGCGCGCCTCCTCAGGCTCTCGCTGGTACGCCGCCTCGGCGCTGCCCGCGCGGC
CGGAGTGCCCCCGCCGTGGCAGACCAGGATATTTCCGGTGAGGGGTTACCAGGCTCGAGG
TTATTCTACCGGAGGAAGCTCCAAGTATGATAAACCGATGAGACAGTTTGCTGAAGAGAA
CGAGTCAAATTCTCAGCCACTAATATATTACATTGTCCCATCTGCCATTCTAGCCTTTGC
TGGACTAGGCACTTATGTTCACTATAATGATGAGAAGCGTGCGGTTCCCTTAGGTAAACA
AGCAGAACAGTCCGGTATTACCAAAAGGTGCACTACCAACAGACCTGCAATCGGAGGACC
ATTTAAGCTCTATGATACGGAAAACAATGTGGTGACTGAATCAAAGCTTCGAGGGAATTG
GACGCTGATGTATTTTGGCTACACATCATCCC

Homology of Contig U35_9363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g20430.1	285	1e-60	protein\|SCO1 protein homolog, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi4g29060.1	280	8e-71
Arabidopsis v10	None