barSeed - Barley Seed Development Database

Probe CUST_36392_PI390587928

Source Contig U35_1836

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36392_PI390587928	Hv_44K_v2	ATCTGTTTATCTTGAACCAAGCATTGGATTAGAGGACTCGTCCCTCACCACCTCAAAAAA	1415	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.363	1.155	1.161	0.814	0.348	0.444
Raw	2596.107	3313.817	3010.110	3237.123	496.743	697.154

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75615.1	1680	9e-22	1522 - 1576	100	55 / 55	plus	ABC06698 ABC43360
JLOC1	JLOC1_50443.1	1510	5e-22	1454 - 1508	100	55 / 55	plus
Harvest21	ABC43360	573	3e-25	12 - 71	100	60 / 60	minus	ABC43360
Harvest35	U35_1836	1486	3e-25	1416 - 1475	100	60 / 60	plus

Contig Sequence (1486 bp)

>U35_1836 1486 Hv_44K_v2
CCTCCCCGCATCTGGAGCCGCTTTCTCCTCGCGAGTCAAACCTTTCTCTCCTCCTCCCTC
CCCTAGATCGGGGAGATGGAGCCGGCCACCATGGCCTGGACGCTGGCGGCGGCGGGTTTC
GCGCTGGTGTACTGGTTCGTCTGGGTGATGGGCGCCGCGGAGGTGCAGGGGAAGCGCGCC
GTCGACCTCCAGATGGGATCCATCGCCGACGACAAGGTCGGGGACAGGTATTCCCAGTAC
TGGTCCTTCTTCCGCAGCCCCAAGGAGACGGCCGCCGCGGCCACCGCCGACAAGGTTCCG
GCCTTCGTCGACACCTTCTACAACCTCGTCACTGACATCTACGAGTGGGGCTGGGGCCAG
TCGTTCCACTTCTCGCCCTCCCTGCCCGGCCGGTCGCACCGGGAGGCGACGCGGGTGCAC
GAGGAGCGCGTTGCCGACCTGCTCGAGGCGCGCCCCGGGAAGCGGCTGCTGGACGTCGGC
TGCGGCGTCGGCGGGCCCATGCGCGCCATCGCGGCGCACTCCGGCTCCGACGTCGTCGGG
ATCACTATCAACGAGTACCAGGTCAACCGCGCCCGCTCGCACAACCGCAAGGCCGGCCTG
GACAAGCAATGCGAGGTGGTGTGCGGCAACTTCATGGCCATGCCGTTCCCAGACGCGTCC
TTCGACGGCGCCTACTCCATCGAGGCCACCTGCCACGCGCCCAGGCTGCAGGACGTCTAC
GGCGAGGTCTTCCGCGTGCTCAAGCCAGGGGGGCTCTACGTCTCATACGAGTGGGTCACC
ACCCCGCTGTACCGCGCCGACGACCCGGAGCACGTCGAGGCCATCCACGGCATCGAGCGC
GGCGACGCCCTCCCTGGCCTGCGCCGGCAAGACGAGATCGCCACCGTCGCCAAGGAGGTC
GGCTTCGACGTCGTCAAGGAGCTGGACCTGGCGCTGCCGCCGGCGCTCCCCTGGTGGACG
CGGCTCAAGATGGGGCGCCTCTCCTACTGGCGCAACTCGCTGGTGATCCGGGCGCTCACC
CTGCTGCGCGTGGCGCCCAAGGGCGTCTCCGAGGTGCACGAGATGCTGTACGAGACGGCG
CATCACCTCACCCGCGGCGGCGAGACCGGCATCTTCACCCCAATGCACATGGTGCTGCTC
CGCAAGCCGGCCACCGCCGCTGAGTAGACAGTAGCATCACATGCGCAAGAATGCAGCAGC
GAATCCTAGCTCTTGCCACGGGCGGGCAGCTAGGAGCGGAATCAGACGAGGAAATGCAGC
TCTTGGTTTTGATCTTAGCATGAATGAATTCTTCTGTTCGTAGACATTCTTCTTGTTCTT
AGACTGAGGCTGGTTAATTAGTTCCGGGGGAGTCGGTATCACCCGAAATCCCCACTTTAT
TTTTTTTTCCTGTTTATTAATATGTGGAAGAATCGATCTGTTTATCTTGAACCAAGCATT
GGATTAGAGGACTCGTCCCTCACCACCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04340.1	364	0.0	protein\|C-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g32420.1	372	0.0
Arabidopsis v10	AT1G20330.1	361	2e-175	\| Symbols: SMT2, CVP1, FRL1 \| sterol methyltransferase 2 \| chr1:7038968-7040053 REVERSE LENGTH=361