barSeed - Barley Seed Development Database

Probe CUST_36391_PI390587928

Source Contig U35_1837

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36391_PI390587928	Hv_44K_v2	TGTATCGTCGTCGGCTATATTTTGCCCTGAAAAATCAGATGGAGGTTGTGCATGAAAAAA	1598	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.443	1.313	2.618	2.156	0.847	0.769
Raw	541.725	2617.453	4389.117	5502.993	791.083	772.296

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353686	1610	7e-23	1501 - 1557	100	57 / 57	plus	ABC06698 ABC43360
MLOC	AK376520	1408	3e-21	1355 - 1408	100	54 / 54	plus	ABC06698 ABC43360
MLOC	MLOC_73342.1	1452	3e-21	299 - 355	98	56 / 57	minus	ABC06698 ABC43360
JLOC1	JLOC1_48830.1	1483	2e-21	330 - 386	98	56 / 57	minus
Harvest21	ABC06698	1422	1e-23	1352 - 1411	98	59 / 60	plus	ABC06698
Harvest35	U35_1837	1669	3e-25	1599 - 1658	100	60 / 60	plus

Contig Sequence (1669 bp)

>U35_1837 1669 Hv_44K_v2
CCCTAGCGCCGTCGGATCAGATCCCACTCCACCCCCTCCGCGGCTCCACGCCCTGCCGGC
CTCCCGCCGCTCGTTATATTCCGCGGCCGGCCGGATTCACTACTCGTTTTTCGTCTCCCC
CCTCCTCTGTCTCTGTCTGCCTGCCCTCCTCCTCGAGCTCCTGAGGGAACGAAGGAAGGA
TGGAGCCGGCGACGATGGCGTGGACGGCGGGGCTGGTGGGCGCCGGGCTGGTCTACTGGT
TCGTGTGGGTGATGGGGGCGGCGGAGGTGAAGGGGAAGCGGGCGGTGGATCTCAAGATGG
GATCCATCACGCGGGACAAGGTGCAGGACAAGTACACGCAGTACTGGTCCTTCTTCCGCC
GCCCCAAGGAGACGGCCACCACGCAGGCCTCCGCCGACAAGGTGCCCGCCTTCGTCGACA
CCTTCTACAACCTCGTCACCGACATCTACGAGTGGGGCTGGGGCCAGTCCTTCCACTTCT
CGCCCTCCCTCCCCGGCCGCTCCCACCGCGACGCCACCCGCGTCCACGAGGAGCGCGTCG
CCGACCTGCTCGCCGCCAGGCCGGGCCACCGCGTGCTCGACGTCGGATGCGGCGTCGGCG
GGCCCATGCGCGCCATCGCCGCCCACTCCGGCGCCCACGTCGTCGGCATCACCATCAACG
AGTACCAGGTGAACCGCGCCCGAGCACACAACCGCAAGGCCCGGCTGGACGCGCAGTGCG
AGGTGGTGTGCGGCAACTTCATGGCCATGCCCTTCGACGACGCCTCCTTCGACGGCGCCT
ACTCCATCGAGGCCACCTGCCACGCGCCCCGGCTGCAGGACGTGTACGCCGAGGTGTACC
GCGTGCTCAAGCCCGGCCGCCTCTACGTCTCCTACGAGTGGGTCACCACCCCGCTGTTCC
GCGCCGACGACCCGGCGCACGTCGAGGCCATCCACGGCATCGAGCGCGGCGACGCGCTCC
CGGGGCTGCGCCGGCAGGACGAGATCGCGTCCATCGCGCAGGAGGTCGGCTTCGAGGTGG
TGCAGGAGCTGGACCTGGCGCTGCCCCCGTCGCTGCCCTGGTGGACGCGGCTCAAGATGG
GGCGCCTCGCCTACTGGCGCAACTCCCTGGTGGTCCGCGTGCTCACCCTGCTCCGGATCG
CGCCCAAGGGCGTGGTGGAGGTGCACGAGATGCTGTACGAGACCGCGCAGCACCTCACGC
TCGGCGGCGAGACCGGCATCTTCTCGCCCATGCACATGGTCGTCCTCCGCAAGCCCGCCG
ACGCCGACGCCGAAGCCGAGGAGAGCAGCAAATAGAGTGCGATCAAGGATCAAACAAACA
AGAGGAAGGAACAAGAAATAATTTCGATTTCTAATGAGAGGTAAGAATCTATGAGGAGGA
CAGGCGTATTCATAGCTAATGGAGCACTATTGATTTGGCCTCGGTGCCGAGAGGAAAGAA
GAATAGGAACGGCGGATGAAGCTTACTGTTTTGGTTGGTAGCTTTCGTTTTCGATTTTTG
GTTGGAGTTTGGACCGCATGCGTGCGTGAGTGCAGGCTGGATTCAGATTTGTTTCTGCTT
TGATCCGTGGATAGATCTTTTCCTTCTTCCTTCTTCTATGTATCGTCGTCGGCTATATTT
TGCCCTGAAAAATCAGATGGAGGTTGTGCATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04340.1	364	protein\|C-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g76020.1	369
Arabidopsis v10	AT1G20330.1	361	\| Symbols: SMT2, CVP1, FRL1 \| sterol methyltransferase 2 \| chr1:7038968-7040053 REVERSE LENGTH=361