barSeed - Barley Seed Development Database

Probe CUST_36386_PI390587928

Source Contig U35_1842

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36386_PI390587928	Hv_44K_v2	TTGAGAGAATGTGACAACAATCACTCGAGAAACTTCATGGCAGTACAAAGAGCCCTGAGG	1859	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362062	4014	2e-24	3415 - 3474	100	60 / 60	plus	ABC04174 ABC04175
MLOC	MLOC_17932.1	2594	2e-24	594 - 653	100	60 / 60	minus	ABC04174 ABC04175
JLOC1	JLOC1_12391.1	2648	8e-25	1939 - 1998	100	60 / 60	plus
Harvest21	ABC04175	2518	3e-25	1860 - 1919	100	60 / 60	plus	ABC04175
Harvest35	U35_1842	2519	3e-25	1860 - 1919	100	60 / 60	plus

Contig Sequence (2519 bp)

>U35_1842 2519 Hv_44K_v2
GCGTGGTACATCCTCTCGCAGAAGCACCTGATGGGGAGGAAGTGCCAGTCGTCAACTTTG
GGTCGGCCGGCGTAATCCGCTGCCGAAGATGCAGGACATATATAAATCCTTATGCAACAT
TTGCAGATGCTGGAAGGAAATGGCGCTGCAATCTCTGCACATTGCTCAATGATGTTCCTG
GTGAGTACTTTTGTGGTCTTGATGCTAGTGGCAGAAGATTTGATACAGATCAAAGACCAG
AACTTTCTAAGGGAACAGTGGAGTTTGTTGCTCCTACTGAATATATGGTCAGGCCACCAA
TGCCGCCTTCCTATTTCTTTCTTATTGATGTCTCAGTATCTGCAGTTCGAAGTGGGCTGC
TCGAGGTAGTTGCGAAGACCATCAAGTCATGTCTTGATGATCTTCTAGGCTTTCCACGGA
CACAAATTGGATTCTTAACCTTTGATAGCACATTACACTTCCACAATTTCAAGTCTTCTC
TGAGTCAGCCTCAAATGATGGTGGTTGCCGACTTGGACGATGTTTTCCTGCCATTGCCTG
ACGATCTCTTGGTTAATTTGGTCGATTCTAGACATGTTATCGAGTCTTTCCTCGATAACT
TGCCCAATATGTTTCAGGACAATGTAAATGTAGAATCTGCTCTTGGTCCTGCACTTAAAG
CAGCATTCATGGTTATGGGTCAAATTGGGGGAAAGTTGCTTGTCTTCCAGAGCACATTGC
CATCTCTTGGTATTGGCCGTTTGAGACTTCGAGGAGATGATGTCCGTGCATATGGAACAG
ACAAGGAGCATATTCTGAGGATACCAGAAGATCCCTTCTATAAACAGATGGCTGCTGAGT
TCACGAAAAATCAGATCGCCGTGGACATATTTTCTTTGAGTGACAAGTATTGTGATATAG
CTTCCTTAGGTTCTCTGGCGAAATATACTGGTGGTCAGGTGTACCATTATCCCTCCTTCC
AGGCAACTACTCATGGGGAGAAACTTAGACATGAGCTTAGCAGAGACCTTACTCGGGAGA
CTGCTTGGGAATCTGTAATGCGTATCAGATGTGGAAAAGGGGTGCGTTTCACAACTTATC
ATGGTCATTTCATGCTAAGGTCCACAGATTTGTTAGCTCTTCCAGCTGTTGACTCTGATA
AAGCTTTTGCGATGCAACTGTCTCTAGAGGAGACCCTAATGACCACACAGACTGTTTACT
TCCAAGTGGCCTTGCTATATACATCATCTTCTGGTGAACGACGTATCAGGGTGCACACGG
CAGCTGCACCTGTGGTCACAGATCTTGGTGAAATGTATCGTCAAGCAGATACTGGTGCTA
TTGTGTCAGTGTTGGCCAGAATTGCTGTTGAAAACTCACTGTCTGATAAGCTGGACAGTG
TTCGACAACAATTACAGTTAAAACTTGTGAAAAGTTTAAAGGAATACCGGAACCTATATG
TTGTACAACATCGGATAGGAGGGAGACTGATATATCCAGAATCATTAAGATATTTGCCAC
TATACATCCTCGCCCTATGCAAATCCCTTGCTCTGCGTGGTGGTTATGCTGATGTCTCTC
TTGATGAACGATGTGCTGCTGGTTTCAGTATGATGATACTGCCTGCAAGAAGGCTGCTCA
ATTTTATTTATCCATCTCTGTACAGGCTTGACGAAGTATTGACAGTGGAACCAGATAGGA
TTGATGGGTCCCTGAAGCGGTTGCCATTAACCTTACAGTGCCTAGACACTGCTGGTTTAT
ATCTTCTTGATGATGGCTTCACCTTCCTAGTATGGTTAGGTAGAATGCTCCAGCCTGAGC
TCATGAACGACATTCTTGGAGTCAGCCTGTCAAACTTCCCTGATCTATCAAAGATTCAGT
TGAGAGAATGTGACAACAATCACTCGAGAAACTTCATGGCAGTACAAAGAGCCCTGAGGG
AGAGGGATTCTTCGTGTTACCAGCTGCCCCGTGTTGTACGGCAAGGTGAGCAGCCAAGAG
AGGGCTTCTTGCTTCTGTCCAACCTCGTCGAGGACCAGATGGCTGGAACCAGCAGTTACA
TGGATTGGATACTCCAGATTCACCGCCAAACACAGAGCTCGTGATGATGTACCGTGGATG
TTCCAGAAATTTTTGTTTTTGTGTAAACCGCTGCAGATTCGGCTGCTGTGCAAGTCCCCG
GTCGCCCTGGTCGCCCTCTTAACCATTGGAACAAAATGGCGAGCCAGCCGTGCTCTACAT
ATGCCATCCTGTTAGCAGCAACACTCTTGCCGTCAGCGGGCAATACAAACTTTATTGTTA
ATATATTTCGCTCTTGTGATTATTTTTCGTGACGAGAAAAGGACACAGCTGTTGTTTCAG
AATAAGTAGGCAGCACCTTTGGTAAATTGTACAAGCGCTTGGAGTTTTTGGTAGGGGTTT
GTATGCATTTGTATCGTTGACAATTTTAGTTGCAAAGATTGTGTAAACTCTTGTTTGACT
GTTGGTACTGATCTGGCTGCAATAGGAAGCACCTTTTTACTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g04020.1	1032	protein\|protein transport protein Sec24-like, putative, expressed
Brachypodium v1_2	Bradi5g01280.1	1027
Arabidopsis v10	AT3G07100.1	1038	\| Symbols: ERMO2, SEC24A \| Sec23/Sec24 protein transport family protein \| chr3:2245689-2250077 REVERSE LENGTH=1038