barSeed - Barley Seed Development Database

Probe CUST_36364_PI390587928

Source Contig U35_1865

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36364_PI390587928	Hv_44K_v2	GTCCTGTGCACGAATAATTTCGGATATGTTCGTTATGGAAAACTGTCACATGTCTCTAAA	2064	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.804	2.106	1.000	0.868	0.394	0.434
Raw	4726.523	8639.743	3618.417	4993.360	793.582	951.604

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20146.1	2436	2e-23	2353 - 2410	100	58 / 58	plus	ABC05033 ABC34996
JLOC1	JLOC1_13974.2	2741	1e-23	2534 - 2591	100	58 / 58	plus
JLOC1	JLOC1_13974.1	2424	1e-23	2217 - 2274	100	58 / 58	plus
Harvest21	ABC05033	2173	3e-25	2065 - 2124	100	60 / 60	plus	ABC05033
Harvest21	ABC34996	226	6e-22	15 - 74	97	58 / 60	minus	ABC34996
Harvest35	U35_1865	2273	3e-25	2065 - 2124	100	60 / 60	plus

Contig Sequence (2273 bp)

>U35_1865 2273 Hv_44K_v2
CACGAGGTATGTGCTCCGGCATGGCCGCTCCCGATCTCATCCTAGCTGGATAACGCCGTC
CTTATCCCACCAACCCAGTCCGCCTGGTCTTCTACTAATATTTGTTTGTTTGTTGATCAG
TCAGCCCACTTCGGCGCTACCGGCTCTCCCTCCCCGATCCATCCGACTCCTCCCCCTTCC
GTCGCCGGCCGTCGTACCCGCAGCAGCAGAAGGGGATTCGCGCGGGCGCCGACGAGGCGG
ACAGGTCACCGGCAGCCATGGTCGGGCGGAGCTCTCTCCCGGATGGGGCCCTCTTCCTCG
GACTCGACAGCTCCACCCAGTCTGTGAAAGCTACTGTGCTCAGCAATGAGTTAATAATAG
TCGCTTCTGAAACTGTTAATTTTGACTCTGAGTTACCGCACTACAAAACCGAGGGTGGGG
TTTACAGAGATCCTACAGATGACGGCCGTATTTATTCACCAACCATAATGTGGGTGGAGG
CTTTGGAATTGCTGCTTGAGAAACTAAAACCGAAGATCAACTTCAGTAAGGTTGTGGCCG
TTTCTGGGAGTGGGCAACAACATGGCAGCGTTTACTGGAAGAAGGGCAGTCAAGCTGTGC
TGTCTTCCCTGGATCCTGGTAAGAGCTTGGTATCCCAGCTTAAGGATGCCTTTTCTACCA
TGGACTCGCCAATATGGATGGACAGTAGCACTACCAAGCAGTGCAGAGAAATAGAAAATG
CTGTTGGAGGAGCATTGGAGTTATCTAAGCTGACAGGGTCTCGTGCGTATGAGAGATTCA
CTGGGCCCCAGATACGAAAGATCTACCAAACAGCACCACATATTTATGAAAATACCGAGA
GAATATCTTTGGTGAGCTCATTCATGGCATCTATCCTTGTTGGATGCTATGCAAGTATTG
ATGAAACTGATGGCGCTGGGATGAACTTGATGGATATAAACAAGAGGACCTGGTCAAAAG
TTGTTTTAGAGGCCACTGCTCCTGATCTTGAACAGAAGCTGGGAAATCTGGCACCGGCAT
ATGCAGCTGCAGGTCGAATTTCTTCATATTTTGTAGAAAGGCATCAGTTTGACAAGAACT
GTTTGGTTATTCAGTGGTCAGGTGACAATCCCAATAGCCTGGCAGGTTTAACACTGAATA
CACCTGGAGATCTTGCAATCAGCCTTGGTACTAGTGACACAGTTTTTGGGATTACTGCCG
AAGCTAAACCAAGCCTTGAAGGCCATGTTTTTCCCAACCCTGTTGAACCGGATGGTTACA
TGGTGATGCTATGTTACAAAAATGGCTCATTGACCCGGGAAGATGTGCGGAATCAGTGTG
CAGAAAAATCGTGGGATATTTTCAACAGCTACCTAGAGAAAACACCCCCTCTGAATGGTG
GTAGGTTAGGATTCTACTACAAAGACCATGAAATCCTGCCTCCTCTTCCAGTTGGTTTTC
ACCGGTACATTGTCGAGAATTTCAACGACGCCTCCTCTGAAAATCTGACAGAGCGTGAGG
TGCAAGAATTTGATCCACAATCTGAGGTCCGTGCCATCGTCGAGGGTCAGATGCTGTCGA
TGCGAGGGCATGCTGAGCGGTTTGGCATGCCCAATCCCCCGAAGAGGATCATAGCAACCG
GTGGGGCATCCTCCAACGAGAGCATCCTCAAGTTGATCGCACAAATCTTTGGCTGCCCTG
TCTTCACAGTTGAGAGACCGGATTCGGCCTCACTGGGTGCAGCCCTGAGAGCCGCCCACG
GATGGCTGTGCAAGGAGGAAGGAGGCTTTGTTCCCATCTCCCGCATGTACGTGGGCAACC
TGGAGAAGACCTCGCTGGGCGCAAAGCTGGCGGTCCCGGCGCCCGAGGAGGAGGGCAGGG
AGCTCCTGAAGAAGTACACCGCGCTCACGAGGAAGAGGATGGAGATCGAGAGACGGCTGG
TGGAGAAGATCGGGCGTGCGTAGAGATACTAGGACACACCATACGGCGCTTGGGAAATGG
GTATAGGGATTATTAGTAGGAGGTAATAATCATTAGTTCAATTGATAATGTCGCGCGTGT
CAACCGTTGATGGATTATGTCGCGGTCCTGTGCACGAATAATTTCGGATATGTTCGTTAT
GGAAAACTGTCACATGTCTCTAAAAAAAAAAAAAAAAATCTGAAGTGCACAAAATGTCCT
ANNAAAAAAAAAATTTCGGATATGTTCGTTATGGAAAACTGTCCCATGTTTTTCCTTCCT
GGGTTTTTTTAAATTTGAAGGGCCCCAAATGTCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g44660.1	563	protein\|FGGY family of carbohydrate kinases, putative, expressed
Brachypodium v1_2	Bradi1g19920.1	560
Arabidopsis v10	AT5G49650.1	558	\| Symbols: XK-2, XK2 \| xylulose kinase-2 \| chr5:20152898-20155574 FORWARD LENGTH=558