barSeed - Barley Seed Development Database

Probe CUST_36354_PI390587928

Source Contig U35_1875

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36354_PI390587928	Hv_44K_v2	CGGTAAAAAATGTCCTTGTGCTGTGATAATGAACTACTACTATGTGTCTATGTCCAAAAA	663	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.852	3.895	1.229	0.741	0.277	0.390
Raw	1071.715	1781.222	477.782	483.013	58.990	93.441

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37953.1	896	3e-22	67 - 122	100	56 / 56	minus	ABC05025
MLOC	MLOC_37953.2	668	9e-22	614 - 668	100	55 / 55	plus	ABC05025
JLOC1	JLOC1_24626.1	1111	1e-22	925 - 980	100	56 / 56	plus
Harvest21	ABC05025	736	1e-23	664 - 723	98	59 / 60	plus	ABC05025
Harvest35	U35_1875	737	3e-25	664 - 723	100	60 / 60	plus

Contig Sequence (737 bp)

>U35_1875 737 Hv_44K_v2
GCTTTTGGGCCCTATAAATAACCCCACAGGCCCCAAGACACTGCTACCAGCTCACTCCTC
CAGCTCCCTTGGTCTCAAGCTCACACCAACCAGCAGGGCTCTGCCAGAGCCAAGCAACTC
TCAAGAACACCGCGATGAAGAAGCTTCGAACCACCACCACCGCCACCACCACTCTGGCTC
TCCTTCTCCTCCTCGTCCTCCTAGCAGCCTCGACCCTCCGCGTCGCCATGGCTGGATCAG
CGCTCTGCGACGGCAAGTGCGGGGTGAGGTGCTCCAAGGCGAGCCGGCACGACGACTGCC
TCAAGTACTGCGGGATATGCTGCGCCGAGTGCAACTGCGTGCCGTCGGGGACGGCCGGCA
ACAAGGACGAGTGCCCCTGCTACCGCGACAAGACCACCGGCCACGGCGCGCGCAAGAGGC
CCAAGTGCCCATGATCGACCCACCACCAGCCATCCTCCACAGCCCATGGCGGCGCCTACA
TAGCATGCATGTACCTGAACTTCTTCATGCATCCCTCTCATGTCCTACTACGTCGCAGAT
CATTATATCGTGTGCCTGTAACTGTAAATCGTGATCGGCCATGCATGCGTAGCGTCCGAT
GCGTGATCCGACTGTGTTGTTGACCATGCATAATGCCGGCCTAGCGCTACTGTTATGGCA
TGCCGGTAAAAAATGTCCTTGTGCTGTGATAATGAACTACTACTATGTGTCTATGTCCAA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_1875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None