barSeed - Barley Seed Development Database

Probe CUST_36347_PI390587928

Source Contig U35_6423

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36347_PI390587928	Hv_44K_v2	TAATAAATCCAATAGCTCTTCCTTCTGCCAACCTTTCTGCTCCCCAATAAGGGTACAAAG	1186	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15937.4	1383	7e-23	1299 - 1358	98	59 / 60	plus	ABC13953
MLOC	MLOC_15937.3	1451	7e-23	1268 - 1327	98	59 / 60	plus	ABC13953
JLOC1	JLOC1_10957.2	2187	4e-23	1683 - 1742	98	59 / 60	plus
JLOC1	JLOC1_10957.1	1787	4e-23	1283 - 1342	98	59 / 60	plus
Harvest21	ABC13953	1250	3e-25	1187 - 1246	100	60 / 60	plus	ABC13953
Harvest35	U35_6423	1250	3e-25	1187 - 1246	100	60 / 60	plus

Contig Sequence (1250 bp)

>U35_6423 1250 Hv_44K_v2
GGCTGCCACCACCAGATTCCTGACCCCGCTAGCCACAACCTCGCGCACTCTGCTATCATA
TATCCCACCCACAGCCGCGGCAACGAGCAGGAGGCTGCTCCTCTCCTCCACCACCGCCAT
TTGCGCCGCCGCCATGGCCGCCTCCGGCAAGGCCGCCTCCGCTTCTTGCAAGGTCGTGGA
CTCCCATCTCCACGTCTGGGCATCGCCGCTGCAGGCTGCCGAGAATTACCCCTTTTTCCC
GGGCCAGGAGACGACGCTCCGGGGTGATGTGGACTTCTTGCTCCAGTGTATGGATGAAGC
TGGAGTTGACGGCGCGCTCATTGTTCAGCCTATTAATCACATGTTTGACCACTCTTTAGT
TACTAGTGTGTTGCAGAAGTATCCATCTAAATTTATTGGTTGCTGCCTCGCAAATCCTGC
AGATGATGGGAGCGGCATTAAACAGCTTGAACATCTGATTGTGCAAGAAAAATACCGTGC
TGTCCGTTTCAACCCGAACTTATGGCCTTCAGGTCAAAAGATGACTAATGAGGTCGGGAG
ATCATTGTTTGCTAAGGCTGGAGAACTTGGAGCACCAGTTGGAATAATGGTGATGAAGGG
GATCAGTTCATATATTCAGGAAATAGAGGAGCTGTGTACGGATTATCCTGCAACCACTGT
TATATTTGATCATATGGCTTTCTGCAAGCCACCAACGAATGATGAAGAAGAAAAGGCATT
CTCTTCATTTCTGAACTTAGCCAGATTCCCACAGGTTTACGTCAAATACAGTGCTCTTTT
CCGGATCACCAGAGAAGCGTATCCGTATGAGGACACGTCTCAGCTTCTTTCTCGGGTGAT
CTCCAGCTATGGAGCTAACCGAATAATGTGGGGAAGTGACTTCCCCTACGTCGTTCCTGA
ATGTGGCTACAAAGGAGCAAAGGAGGCAATCTCTCATGTCGCTGGCAAGGTAGCTGTTTC
GTCTTCAGATCTGGAGTGGATTTTAGGCAAAACAGTAAGCCAACTATTTCAAGGTGCATG
GGTTACTCCATGAGTGAGATGTAGCATGGCAGGTATGACAGTGTTGCAGCTCAGTCTGGT
ATTGTTCAGTTTAGAAATCCTTGTTTGAAAGGGGGAAGGATCTATCTAGTTTGTTATTGT
TCAGTTTGACAGTCATGTTCAAGTGTGTGCCCCTTCTCCAGAGGTTTAATAAATCCAATA
GCTCTTCCTTCTGCCAACCTTTCTGCTCCCCAATAAGGGTACAAAGCATA

Homology of Contig U35_6423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32150.1	248	6e-169	protein\|amidohydrolase family protein, expressed
Brachypodium v1_2	Bradi5g08360.1	352	0.0
Arabidopsis v10	AT2G35450.1	346	3e-143	catalytics;hydrolases \| chr2:14903201-14905361 REVERSE LENGTH=346