barSeed - Barley Seed Development Database

Probe CUST_36344_PI390587928

Source Contig U35_6426

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36344_PI390587928	Hv_44K_v2	ATCTGTATGTATCATTATCGGTCTCCTTCACATGGTGGCACGTCCGATTTCTTTAAAAAA	1340	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.728	2.216	1.121	0.691	0.309	0.534
Raw	112.389	224.984	101.157	101.670	15.443	29.283

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8221.1	2806	6e-21	2636 - 2688	100	53 / 53	plus
Harvest35	U35_6426	1411	3e-25	1341 - 1400	100	60 / 60	plus

Contig Sequence (1411 bp)

>U35_6426 1411 Hv_44K_v2
GCTACATTGGTATACTTCTTGAAGGCCGTGAACGGTTTGAAGAGGAAGTTTTAGCTGATA
GAAGTAAACTCTGCCAACATGATCATTCTAGCTCTGGGCGTTCTGAGTCGGGGTTCTGTG
ATGAAGAAGTTACTGAGTACTCCATTGTCCCACGCTTGAAAGCATTCTCGGATTGGATTC
TAAAGGCCATGGCTTTGGGTAATCTTGAAGACATTTTCCCTGCAGCTAGTCGTGAATATG
CACCATTGGTTGAGGAACTATGGAAAGATCCTGCTATTCAAGCTACATATAGACGAAGAA
ATGAACTGCCGTTCCTTCCATCTGCTGCCAGTTACTTCCTTGACAGGGTGGTTGATATTT
CTCGAACGGAATATGAGCTCTGTGATATTGATATCCTCTATGCTGATGGAATAACATCCT
CGGATGGATTAGCATCTACAGATATCTCTTTCCCGCAGCTGGCTTTGGATGTGCGGATTG
CTGATGAGCTTGATCCACAAGACACGTTGCTAAGGTACCAGCTGATCAGAATAAGCAATA
AAGGATTGCGGGAGAACAGCAAATGGCTGCAGATGTTTGATGATGTCAGCCTTGTCATCT
TCTGTGTTGCCGTTAGCGATTACGACGAGCATTACGAGGATGCAAATGGCACAGTTGTCA
ACAAGATGATAGAGAGCAGGCAGCTATTTGAGAGCTTCGCCCTTCATCCAACATTCGAAC
AGATGAATTTTCTCCTACTCCTGACCAAGTTTGATCTTCTAGAGCAGAAGATTGGTAAAT
CCCCGCTAACCGCATGCGACTGGTTTGCCGAATTCACCCCGTTGGTAAGCCGCAACCTGA
TTGATGGAACCAGCAGAAGCAAGCGCGGCAGCCACAACGGTGCGTCGCTGGCGCAGATGG
CGGCGCACTACATCGGCATGAAATTCAAGCGGCTGTTCCACTCGCTCACAGAGCGGAAGC
TCTATGTGTCCTACGTGAACGCCCTGGACCAGCAGTCTGTCTGCTCGGCGATCCGCTACG
GCCGGGAGATCGTCAAGTGGGAGGAGGAGAAGCCCGTTTTCGGCTCCAGCGAGACGGTAT
ACAGCGGCGACGAGCCGAGCTCCTACTCCCACTGACGGCGACCAAACATTTGCTCGCGTG
ACAGAAGACGAAGAAGAGGTGTAAATAGTTGTGCATTTCCCTCTCCGGCGACGACCTTTT
TTTTTAGAGCTTTGCCCATTTTGGTTCTTCTTTCCCAGCTCATCTTCTGTTTGTAATTTA
TTGTATGGTTTGTTTGTTTATTAGTTGTTCACACGTAGAATGAGAGGCAAGAGGCCTGCC
TGATTCCGATTAATTCTTGCATCTGTATGTATCATTATCGGTCTCCTTCACATGGTGGCA
CGTCCGATTTCTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40190.1	897	0.0	protein\|G-protein alpha subunit, putative, expressed
Brachypodium v1_2	Bradi4g02930.1	898	0.0
Arabidopsis v10	AT2G23460.1	888	7e-115	\| Symbols: XLG1, ATXLG1 \| extra-large G-protein 1 \| chr2:9995699-9998945 FORWARD LENGTH=888