barSeed - Barley Seed Development Database

Probe CUST_36339_PI390587928

Source Contig U35_6431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36339_PI390587928	Hv_44K_v2	CTGCTGGAGTTCTGGTGTTTAAAGGTGTAAACATCTTGTAATACACGTTTGTTTATTTAG	548	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.230	1.545	1.157	0.787	0.272	0.282
Raw	119.896	239.716	157.579	169.647	19.910	22.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15169.1	2955	2e-24	92 - 151	100	60 / 60	minus	ABC13447
JLOC1	JLOC1_10388.2	2875	8e-25	2806 - 2865	100	60 / 60	plus
JLOC1	JLOC1_10388.1	2873	8e-25	2804 - 2863	100	60 / 60	plus
Harvest21	ABC13448	904	3e-25	30 - 89	100	60 / 60	minus
Harvest21	ABC13447	645	3e-25	38 - 97	100	60 / 60	minus	ABC13447
Harvest35	U35_6432	904	3e-25	816 - 875	100	60 / 60	plus
Harvest35	U35_6431	645	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_6431 645 Hv_44K_v2
CTGTGATCTCCCAGGGTTGCGGATACAGTATTATCTGGTTGACAGCCAGTGGAAGACGAG
GTGCAGAATAGCAGTTTTGGGGTTTGGGCATCCAGCCTGTTCAGCTTATCACGCCTGTGA
GACAAGAATGACCATAGATACCATCCCTTTGCAGCGGCTCGCTTCATTCAATTATACCCA
GCGGGTGCTGCTGCTGTGAATTTTGCGCATCTTGCCCAGAACAGAAGAGCGTGCAAGAGC
TCCTGACACGTTGGACAGTGCTGTGGACTTCAGGTTCATCTCAGGATTTAGCGCTCTGTA
GGTAGGACCAGATTATGCATGTTTGTTGTTGCTAGTGATAAATAGTCGGCTCACTTTCTT
CCATATCGCCATCTCGTGCTTTCAATCGAGCAAGCATGAATTTATTTTTTGGTTTCAACT
GGGGCAAAGATGCCACACTGTAAAACATGGCAGCACCCTCATCCTCCTGGTGAGTCTCGG
CGAAACATTTCTGGCAGAGGTAGAAGCTAGGAGTTTTGTAGAACTGCATGATAACTGTTG
TATGTAAGCTGCTGGAGTTCTGGTGTTTAAAGGTGTAAACATCTTGTAATACACGTTTGT
TTATTTAGAAAATTTTGGTTAACCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None