barSeed - Barley Seed Development Database

Probe CUST_36338_PI390587928

Source Contig U35_6432

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36338_PI390587928	Hv_44K_v2	AGTGATAAATAGTTGGCTCACTTCCTTCCATATCGCCATCTCAGTGCTTTCAATCGAGCA	599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15169.1	2955	2e-24	308 - 367	100	60 / 60	minus	ABC13447
JLOC1	JLOC1_10388.2	2875	8e-25	2590 - 2649	100	60 / 60	plus
JLOC1	JLOC1_10388.1	2873	8e-25	2588 - 2647	100	60 / 60	plus
Harvest21	ABC13448	904	3e-25	246 - 305	100	60 / 60	minus
Harvest35	U35_6432	904	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_6432 904 Hv_44K_v2
ACGCTGTCGGCATCGTTCCATTACCCAAAATGGAACAAGGGGCGAGTCATATGCCTGAAG
TCCCAGCTGAAAAAGCTGCAGGCGGCCATAGATTCCTCAAACGGCGCGGCCATCCCGGGC
TTCGTCCACATGACGGACTCCCGTCTGCCGCCCCCTGGCTCGAAAGTATACACCCGGGAG
CAGCCCCAGGTGGAGAACGGCTCGGCCCATTCTGCCGCAGAATCGTTGGTAGAAGAAGAG
AAGGAGTCGGAGCTCCTCGCGCTGTGATCTCCCAGGGTTGCGGATACAGTATTATCTGGT
TGACAGCCAGTGGAAGACGAGGTGCAGAATAGCAGTTTTGGGGTTTGGGCATCCAGCCTG
TTCAGCTCATCATGCCTGTGAGACAAGAATGACCATAGATACCATCCCTTTGCAGCGGCT
CGCTTCATTCAATTGTACCCAGCGGGTGCTGCTGCTGCGAATTTTGTGCATCTTGCCCAG
AACAGAAGAGCGGTACGTGCAAGAGCTCCTGACACGTTGGACATTGCTGTGGACTTCAGG
TTCATCTCAGGATTTAGTGCTATGTAGGTAGGACCAGATTATGCATGTTTGTTGTTGCTA
GTGATAAATAGTTGGCTCACTTCCTTCCATATCGCCATCTCAGTGCTTTCAATCGAGCAA
GCATGAATTTATTTTTTGGTTTCAACTGGGGCAAAGATGCCACACTGTAAAACATGGCAG
CACCCTCATCCTCCTGGTGAGTCTCGGCGAAACATTTCTGGCAGAGGTAGAAGCTAGGAG
TTTTGTAGAACTGCATGATAACTGTTGTATGTAAGCTGCTGGAGTTCTGGTGTTTAAAGG
TGTAAACATCTTGTAATACACGTTTGTTTATTTAGAAAATTTTGGTTAAAAAAAAAAAAA
AAAA

Homology of Contig U35_6432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None