barSeed - Barley Seed Development Database

Probe CUST_36334_PI390587928

Source Contig U35_6436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36334_PI390587928	Hv_44K_v2	ATACACTGTCCAACCATTCACCATCAGTCGTGCTAAAACAAAACTCTTCGATTCAAAAAA	897	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.139	1.870	0.982	0.839	0.365	0.418
Raw	1890.080	2481.067	1203.082	1655.446	244.766	304.732

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7353.2	2285	6e-21	2127 - 2185	97	57 / 59	plus
JLOC1	JLOC1_7353.1	2316	6e-21	2158 - 2216	97	57 / 59	plus
Harvest21	ABC15341	966	3e-25	898 - 957	100	60 / 60	plus	ABC15341
Harvest35	U35_6436	966	3e-25	898 - 957	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_6436 966 Hv_44K_v2
CATGGATAAGACTTTTGGGTTTGATACAGCTGTGGAAGAAGCTCAACGTGCAATCAATTC
TGCCTATATAGAGGCACGTAGTGCATATCATGGAGTTGGGTTGGTAAAATTAATGGGAAG
AAGCACTGGGTTCATAGCCATGCATGCTTCTCTTTCTAGCGGACAGATTGATGTCTGCCT
AATACCTGAGGTATCTTTTACACTTGATGGGGAACATGGTGTCTTGGCACATCTTGAGCA
TTTACTAGAAACCAAGGGATTTTGTGTGGTTTGTGTGGCTGAAGGTGCAGGACAGGATTT
ACTGCAAAAATCAAATGCAACAGATGCATCAGGAAATGTGGTACTCAGTGATTTTGGTGT
CCACATGCAACAAAAGATCAAGAAACATTTCAAGGACATTGGTGTTCTAGCTGATGTCAA
GTACATCGACCCAACATATATGGTCCGGGCCTGTCGTGCAAATGCATCTGATGCTATCTT
GTGCACTGTGCTTGGACAAAATGCTGTTCATGGAGCATTTGCCGGGTTCAGCGGCATCAC
ATCAGGTATTTGTAACACACATTATGCCTTCCTCCCGATCACAGAAGTCATCACAACACC
GAAGCATGTGAACCCAAATAGCAGGATGTGGCACCGATGTCTCACGTCCACTGGCCAACC
GGACTTCCACTGACTCGCGTTTAGCATTTACTTTGCACAGGCTAAACTCGTTGAATTAAC
ATATTTTTGCTTACCCACAGACTAGTCAGAGCTCAAAGATTAGTCACGGTGCAAGCTACC
AACAAGTTAACAATAATGTAATACTGAGAATGAACTCGATCAGATTGTTTCAGCCCCGTT
TTTTTGTCCATGAACAATTGAGCTGTACAAAGCTCAAGTTGTTCGGAATAATTTGTAATA
CACTGTCCAACCATTCACCATCAGTCGTGCTAAAACAAAACTCTTCGATTCAAAAAAAAA
AAAAAA

Homology of Contig U35_6436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24910.2	528	2e-149	protein\|phosphofructokinase, putative, expressed
Brachypodium v1_2	Bradi4g30260.1	532	1e-153
Arabidopsis v10	AT2G22480.1	537	9e-121	\| Symbols: PFK5 \| phosphofructokinase 5 \| chr2:9545670-9548414 FORWARD LENGTH=537