barSeed - Barley Seed Development Database

Probe CUST_36333_PI390587928

Source Contig U35_6437

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36333_PI390587928	Hv_44K_v2	TTGTTCCCGAGTCTCTCCATTGTATGCGTGTGCTTCGTACTTCAGTTTAATCCATGTGTA	1487	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	1.516	1.591	1.240	0.495	0.736
Raw	1053.061	2521.367	2335.737	2917.581	396.152	646.946

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11568.1	2776	2e-24	121 - 180	100	60 / 60	minus	ABC14056
JLOC1	JLOC1_7671.2	2801	8e-25	2589 - 2648	100	60 / 60	plus
JLOC1	JLOC1_7671.1	2378	8e-25	2166 - 2225	100	60 / 60	plus
Harvest21	ABC14056	1547	3e-25	1 - 60	100	60 / 60	minus	ABC14056
Harvest35	U35_6437	1547	3e-25	1488 - 1547	100	60 / 60	plus

Contig Sequence (1547 bp)

>U35_6437 1547 Hv_44K_v2
GGATCTATGGAGGAAAATTATATGATCTGCTTAATGAAAGGAGTAAACTTTGCATGAGAG
AAGATGGAAAACAGAAAGTTTGCATTGTTGGTTTACAAGAGTACAGGGTGTCTGATCTTG
AAACTATCAAGGAGTTGATTGAGAGAGGTAATGCCACCAGAAGTACTGGTACAACTGGTG
CAAATGAGGAGTCATCACGATCTCATGCCATTCTTCAGCTTGCTATCAAACGGCGTGTTG
ATGGCAATGAGTCTAAGCCACCCAGATTGGCTGGCAAGTTGTCGTTTATTGACCTGGCTG
GCAGTGAGCGTGGTGCTGATACAAATGAAAATGATAAACAAACAAGAATTGAGGGTGCTG
AGATCAATAAAAGTTTGCTTGCTTTAAAGGAATGCATCAGAGCACTTGATAATGATCAGA
ATCATATTCCCTTCCGTGGTAGCAAGTTGACTGAAGTTTTGCGAGATTCATTCATTGGAG
ACTCGCGCACTGTCATGATATCATGCATTTCCCCTAGTTCTGGCTCTTGTGAACATACAC
TGAACACATTGAGATATGCTGATAGAGTGAAGAGTCTGTCAAAAGGAAGCAACAGCAAGA
AAGATGTGCCTTTGGCTGCTGCACCTTTACGAGAGTCGAGTCCTTCGCCATTGGCTCCGG
TTGTACCCTCTTTCTCTCCAGCGGAGGTAATGAATGATATCACTGAAAGGGGTAAGTTTG
GTTGGCCCAAGCAGCAGTATGCCAAAGAACAGCCATCGCCATCGTATGTGGATAGAATGC
CCAAGGGTAGGGAAGACACTGAGTTCAGTTCGGCGAATACTGGTTATTTCAACGAACAAA
GGAACAGAGGTACTGCAGCAACAGGCATAGCCGTTGTACCAGGTACACTGTACCAGCAGG
GAAGGAAACAGGCACAGAAGGGTAGAGATCCGGCTTCCGAGAATAATATGAGAAATTCTG
TTGCTTACCCAATTAGAAGTGCTGTGCCAGACGAAGATGACCATCTGAATGACCTCCTTC
AGGAAGAGGAAGATTTAGTTAGTGTTCACAGAAAGCAGGTGGAAGAGACCCTGGACATAA
TTAAAGAGGAGATGAACTTACTAATAGAAGCAGATCAGCCTGGCAACCAACTGGACGACT
ACGTTACAAGACTAAGCGGTATCCTCTCACAGAAAGCTGCTGGAATTGTGGATTTACAAG
ATCGTCTGGCACAGTTCCAGAGGCGCTTAAACGAGAATAGCGTGCTGCTATATTCCGAGT
GCCCTTGATCATAAGAGCGGCATATTCGTCGCTACTACGTCTCCGAGGGTAATGAGGAAG
TTGGGGACAGAGGCAGCAGAGTCTATCTGCCCCCATGAGCTCTGCACCGACGCGGTCTCG
CCTTGCGAACGCCGGTGCCGATGCAGTTCTGAACCCATAGATGCGGCGAAAGCAGAACTA
GATGGCTAGTCGACTGCTGCTTTACGGTGGCCTTCTCCGTAACATATTTGTTCCCGAGTC
TCTCCATTGTATGCGTGTGCTTCGTACTTCAGTTTAATCCATGTGTA

Homology of Contig U35_6437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43580.1	708	0.0	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g44040.1	705	0.0
Arabidopsis v10	AT3G16060.1	684	1e-157	ATP binding microtubule motor family protein \| chr3:5447503-5451196 FORWARD LENGTH=684