barSeed - Barley Seed Development Database

Probe CUST_36332_PI390587928

Source Contig U35_6438

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36332_PI390587928	Hv_44K_v2	CATTAGCAAATTGATCACTGTGCACTTTGAAACGATTGAACATCATGACATGCTTGATAA	827	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.137	1.050	1.346	1.002	0.470	0.359
Raw	1147.950	1642.102	1869.253	2117.029	358.095	295.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35934.1	1047	6e-24	943 - 1001	100	59 / 59	plus	ABC14467
JLOC1	JLOC1_23160.1	1076	3e-24	943 - 1001	100	59 / 59	plus
Harvest21	ABC14467	903	3e-25	828 - 887	100	60 / 60	plus	ABC14467
Harvest35	U35_6438	903	3e-25	828 - 887	100	60 / 60	plus

Contig Sequence (903 bp)

>U35_6438 903 Hv_44K_v2
CGCAGCAAACACCATGGCCGCCGCACCGACGCCGCAGCCCTTGCTCCCGGTGACCAACCC
CTCCTCCGGCGGCGGCTCGGCGCCGTCCTCCGGTAGCGGCCTCTCCGACTCCGCGCTAGC
CACGCCGGCCTTCCGGCTCTTCCTCAGCAGGGTCTCCGACACGGCGCGGCGCTCGCTCGC
GGATCGCCGCCCCTGGACGGAGCTCATCGACCGCTCGGCCATCTCGCGGCCGGACTCCCT
CTCCGAGGCCACCTCGCGGCTGCGCCGCAACCTCGGCTACTTCCGCGTCAACTACGCCGC
CGTGGTGGCCTTCTCCCTCGCGGCCTCCCTCCTGGCGCACCCCTTCTCGCTCCTCGTCCT
CCTCAGCATCCTCGGCGCCTGGTGCTTCCTCTACGTGTTCCGCGCGCCCGACCAGCCCGT
CGTGCTCTTCGGCCGCACCTTCACCGACCGGGAGACACTGCTAGGCCTCGTCGTCTCGTC
GCTGCTCGCCTTCTTCCTCACGTCCGTCGCCTCGCTCATCATCTCCGGCCTGCTCGTCGG
CGGCGCGCTGGTGGCGGTGCACGGCGCGTTCCGCATGCCAGAGGACCTCTTCCTCGACGA
CTCGACCGCTGTTTCAAGCGGCAACGCTTCCCACAGGCTGCTCTCCTTCCTCGCGTCGCC
CGGATCTGGTGTTTGAAGCCTGCGCGAGATCTGGTAGCCTTCTTGGATCAACGAGTTCAT
TTCAAGCCTGAACCTAATTTAGCGAGATCTGATTTTGGTTTTTAATATGCATCTCCAGTT
ATGCAAACATCCGCGAGAGCTGTATGCTCTCGTATTTGACTGTTAAGCATTAGCAAATTG
ATCACTGTGCACTTTGAAACGATTGAACATCATGACATGCTTGATAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_6438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39670.1	221	8e-89	protein\|prenylated rab acceptor, putative, expressed
Brachypodium v1_2	Bradi2g53810.1	224	4e-104
Arabidopsis v10	AT2G40380.1	213	1e-57	\| Symbols: PRA1.B2 \| prenylated RAB acceptor 1.B2 \| chr2:16864734-16865375 REVERSE LENGTH=213