barSeed - Barley Seed Development Database

Probe CUST_36328_PI390587928

Source Contig U35_6442

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36328_PI390587928	Hv_44K_v2	CTACCGCTGTACTCCGTATTACACAATGTAAGCTCAACAGAGTTGAGTTCGTGCAAAAAA	870	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.185	1.837	0.983	0.927	0.362	0.501
Raw	255.265	229.062	109.777	162.697	22.090	33.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24640.1	1794	2e-21	1682 - 1742	97	59 / 61	plus
Harvest21	ABC13809	935	3e-25	6 - 65	100	60 / 60	minus	ABC13809
Harvest35	U35_6442	935	3e-25	871 - 930	100	60 / 60	plus

Contig Sequence (935 bp)

>U35_6442 935 Hv_44K_v2
AGATCAACAGTAGACCTCGTATCAAACTTTCCGAGGATGTGGCAAAAGTCTCTATTCCAT
GCAAAAAGCGGTGTTTCAGATTGTATGGAAAAGAAGGCTATCCGTTGGTAGACATCATGA
TACGTGAAAGCGAACCATCACCAAAGGCAGGAGAGCGAATTCTTTGCCGTCACCCGTTCC
TTGAATCCAAGAGGGCTTATGTTGTCCCCCAGCATGTTGAGGAGCTGCTACATTGTTACT
GGCCTGGGAGTTCAGATAAACCTAGAGCAGAGCTGCCCCCGCTGGAGAAGATCAGAAGCC
GCTGTATGCAACAGCTCGAAAAACTGCGGCCGGATCACATCAGGCGGCTAAATCCGACAC
CTTACAAGGTGAGTGTGAGTGCAAAGCTGTATGAGTTCATTCATTACCTATGGCTGAACG
AGGCGCCAGTAGGCGAATTACAGTAGATGGCTGCACAAGTTGGAGTCGGACCACATTCTT
GCAAGCATAGTAATACGTTATACTACGTCAAAGAAAGTTAGAGCAGTGCTGTTGTACAAC
ATGACGATCCATCAGCTCATAGCCCCATCTCGTAGAATTTTATTTTTGATCTCCAGTTTC
CATATGTACAAATTCATTGCCAGTATAAAGGCTGGTGGAATCCTATATGAAGTGTTATGG
AATTATTAAAGAATAAGCATCAGTTGGGAGGAGCATGGTTGTTGCTTTGCAGCACACACC
GACACATTTGCGAGGCTGAAACTTGAGGCGCACCATGTGTCGGCTCTAGTTTTGATCTTG
CTTGGCTTATTTATGTGAGGCTACCTGGAGATGAATACAAAGGACACACTCAAACAGCTA
GCAGAAAAGGACGGGTGATGTGCTTTCCAACTACCGCTGTACTCCGTATTACACAATGTA
AGCTCAACAGAGTTGAGTTCGTGCAAAAAAAGAAG

Homology of Contig U35_6442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g35060.1	564	1e-92	protein\|nicotinate phosphoribosyltransferase family domain containing protein, expressed
Brachypodium v1_2	Bradi5g10140.2	568	1e-96
Arabidopsis v10	AT2G23420.1	557	2e-78	\| Symbols: NAPRT2 \| nicotinate phosphoribosyltransferase 2 \| chr2:9971819-9974909 FORWARD LENGTH=557