barSeed - Barley Seed Development Database

Probe CUST_36305_PI390587928

Source Contig U35_6465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36305_PI390587928	Hv_44K_v2	CATGTGTTCTGTAGCCCCTCTTCCATTTGGAATCAAATTTCGCATTGATATTTGTTAAAA	977	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71571.1	2306	7e-23	2219 - 2275	100	57 / 57	plus	ABC13970
JLOC1	JLOC1_47583.1	1880	4e-23	1175 - 1231	100	57 / 57	minus
JLOC1	JLOC1_47582.4	3134	4e-23	1532 - 1588	100	57 / 57	plus
JLOC1	JLOC1_47582.3	3136	4e-23	1534 - 1590	100	57 / 57	plus
JLOC1	JLOC1_47582.2	3332	4e-23	1730 - 1786	100	57 / 57	plus
JLOC1	JLOC1_47582.1	3752	4e-23	2150 - 2206	100	57 / 57	plus
Harvest21	ABC13970	1050	3e-25	978 - 1037	100	60 / 60	plus	ABC13970
Harvest35	U35_6465	1050	3e-25	978 - 1037	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_6465 1050 Hv_44K_v2
CCATTTGGAAGAAACCTAATCAGGCGTCATGCCTTCCTAACCAAAATGAATTTGGCCTTG
ATTTGTGTAGTACTGGTGATGATCCAGACGAAGCATGGTACTTCAAGTTGAAGAAATGCA
TTAGTAAAGTTTCTCTGTCGGAAGAAATAGCAGTTGGTTCCATTGATAAGTGGCCAAATA
GACTGTCTAAACCTTCTGCTAGGGCCTCCTTTATGGATGATGGTGTAAACTTGTTTGAAG
CAGATACACAGAAGTGGGTCAAAAGAGTATCATATTACAAGAGATCACTTGGTGTGAAGC
TAGGTACTGCACTCATACGTAATGTCATGGACATGAATGCGTTCTTTGGAGGATTGGCGG
CTGCTGTAGCGTCCGATCCTGTGTGGGTTATGAATGTTGTTCCTGCTAAAAAACCATTGA
CACTTGGCGTAATATATGACAGGGGCCTGATTGGAGTTTATCATGATTGGTGTGAGCCTT
TCTCAACATATCCTCGTACCTATGATCTGATTCATGCTGATGGAATCAATTCTTTGATAA
GCGACCCAAAGTCCGGAAAGAGCAGATGTGACCTGTTTGATGTCATGTTGGAGATGGACC
GCATACTGCGCCCAGAAGGAACTGCTGTCATACGGGACTCCCCAGATGTGATCAACAAGG
CTGTACAGGTAGCGCAGTCGATTCGGTGGACTACTCAGGTACATGACAGTGAGCCCGAAT
CAGGCAGTGCTGAGAAAATACTCGTAGCGACGAAAACATTTTGGAAGCTACCATTGACAT
CAGGATAGTTTAGTTGTGTCCACGTTTATAACATTTTCGCCTTTCCCCCCTTTAGATTCC
CCTGATTTTGTGTCTTTTGGGGATGGGTTGGAGGGATTAGCACTGATATCAGGTTGATGC
GGAAATAGCTATGGAGTACTACTGCATTGTTGGTTCTTTAGAAAGAGTCAAGTGCTGAGG
TGTGGTGTGATTCTTTGCATGTGTTCTGTAGCCCCTCTTCCATTTGGAATCAAATTTCGC
ATTGATATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48140.1	587	4e-162	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g18760.1	584	7e-170
Arabidopsis v10	AT4G00740.1	600	3e-118	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:307815-310298 REVERSE LENGTH=600