barSeed - Barley Seed Development Database

Probe CUST_36303_PI390587928

Source Contig U35_6467

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36303_PI390587928	Hv_44K_v2	CAAATCAAGATGGTGCTGTTTGCATGAAGCCAACATCAGTGTCGACGTCGTTCTAAAAAA	1241	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.736	4.999	1.423	0.724	0.863	0.780
Raw	45.859	69.009	15.305	12.162	3.394	3.992

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11948.1	1645	5e-22	1526 - 1580	100	55 / 55	plus
Harvest21	ABC13317	983	3e-25	914 - 973	100	60 / 60	plus	ABC13317
Harvest35	U35_6467	1311	3e-25	1242 - 1301	100	60 / 60	plus

Contig Sequence (1311 bp)

>U35_6467 1311 Hv_44K_v2
GTTTTGCTCACCGTGTCGCGCGTCTGCTCTGCTCCGGGGAGGCCGCCGCCGCTCTCAGCC
GCTCCCCTGACGACCCTCGAGCGGTCTCCGACCCCAAGGGGAGGCGAGGAGCAATGGTGG
AGAGCGAGTACAGGTGCTGGGAGGAGCTGCTGCCGGACGCGCTGGGGCTCGTCTTCCGGA
ACCTGCCGCTGCAGGAGGTGCTGACGGTGGTGCCGCGGGTGTGCAAGTCGTGGGGGCGCG
TCGTGGCCGGGCCCTACTGCTGGCAGGAGATCGACATCGAGGAGTGGAGCCAGCAGCGGC
AGAGCCGCCCGGACCAGCTCGTCCGCATGGTCGAGCTGCTCGTCCGCCGCAGCTCCGGCG
CCTGCCGCCGCATCAGCGTCTCCGGCCTGCCCTGCCACCCGCTCTTCTCCTTCATCGGCG
ACCACGCGCGCGCTCTGCGGACGCTGGAGATCCCGCGGAGCGACATCAGCGACGCCGTGG
TGGAGGCGGTGGCGCCGGGGCTGCCGAACCTCACGTTCCTGGACGTGAGCAGCTGCACCA
AGATCGGGGCGCGCGCGCTGGAGGCGTTCGGCAGCCACTGCCGGTCGCTGGCGGCGCTCC
GGCGCGTGATGCACCCGATCGACGTGGCCGGGCGCAACGCGTGCGGGCAGCACGACGAGG
CCCGCGCCATCGCCCGCACCATGCCGGGGCTCCGCCACCTGGAGGTCGGCTACATGCTGG
TCACCACGGAGGCCATCCTGGAGGTGCTCTCCCGGTGCCGGGGCCTGGAGTTCGTCGACC
TCCGGGGCTGCTGGGCCGTCGACGAGGCGCTGCTGCGGGAGCGGCACCCGGGGCTCAGCG
TCCTCGGCCCGGCCGTCGACGACTGCTTCGAGAACAGCTACTGGGAGGAGTGCTCCGACG
ACGACGACGACGACGTCTACTCGTGGGAGCTCATGGACGACGACGAGTACTACGCGGTCG
TCGGCAGCGACGACGACGAGGCGGTGTGGGCCGACGGGCCGGGCCTCGTGGAGAACCTCG
AGGTGCGGTTCTACGGCGGCGGGTTCAGCGAGAGCTACGCCGGCTTCGACTGGCCAGCGT
CGCCGTGACAGCCCCGGCCGTTCGTGTTCTTGACGTTCCTATGCTGGTCGTTCAGACACG
TGTGCGCGTGCGTGCGTGCGTGCCAGTAGTAATCTGGGTGAGTGATGTAACCTTAATCAG
GTGTCAAGTTCAAAAAAACTTAACCTGATGTCTACATGTAGCAAATCAAGATGGTGCTGT
TTGCATGAAGCCAACATCAGTGTCGACGTCGTTCTAAAAAAAAAAAAAAAA

Homology of Contig U35_6467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52130.5	325	3e-179	protein\|OsFBX61 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi3g58610.1	338	0.0
Arabidopsis v10	AT4G08980.1	317	2e-88	\| Symbols: FBW2 \| F-BOX WITH WD-40 2 \| chr4:5758993-5760108 FORWARD LENGTH=317