barSeed - Barley Seed Development Database

Probe CUST_36301_PI390587928

Source Contig U35_6469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36301_PI390587928	Hv_44K_v2	CTGTACAAGTTCTGCTGACATGTTAATTCTTTGGATGCTGCGGATGAATTTATAGAAAAA	1210	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.969	1.857	1.202	0.735	0.252	0.281
Raw	1510.170	2192.595	1270.826	1253.815	146.569	179.371

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57607.2	2061	2e-24	171 - 230	100	60 / 60	minus	ABC13403
MLOC	MLOC_57607.1	2446	2e-24	207 - 266	100	60 / 60	minus	ABC13403
JLOC1	JLOC1_37360.2	2310	8e-25	2063 - 2122	100	60 / 60	plus
JLOC1	JLOC1_37360.1	2473	8e-25	2226 - 2285	100	60 / 60	plus
Harvest21	ABC13403	1276	3e-25	1211 - 1270	100	60 / 60	plus	ABC13403
Harvest35	U35_6469	1276	3e-25	1211 - 1270	100	60 / 60	plus

Contig Sequence (1276 bp)

>U35_6469 1276 Hv_44K_v2
GGGCTGAGGAATTCGGACGAGGTTGGAATATCTTGCCAGGCCACTGAGAACATCCAAATA
AGAGAATGCTTTGGTATGCGCCCTGAAATGACTGGAGTGTTAGTGAGTAGAATAAATCCT
CTATCTGATGCTCACAAAATTCTGAAGAAAGATGATATCCTTCTTGAGTTTGATGGCGTG
CCTATTGCGAATGATGGGACAGTTCCGTTCCGAAATAGGGAGAGAATCACCTTTGATCAT
CTTGTGTCCATGAAGAAGCCTGAAGAAACAGCCGTTATCAAAGTACTAAGAGATGGCAAA
GAGCATGAATTGAATGTGACACTTAGACCTTTGCAACCTTTGGTTCCCGTGCATCAGTTT
GACAAACTACCCAGCTACTACATCTTTGCTGGTTTTGTTTTTATCCCGCTGACCCAGCCT
TATCTCCATGAATTTGGAGAAGACTGGTACAACACTTCACCACGCCGACTCTGTGAACGT
GCACTGAGAGAGCTTCCAAAGAAGGCTGGTCAGCAGTTAGTAATATTATCTCAGGTCCTC
ATGGATGATATTAATGTCGGTTATGAAAGGCTGGCTGAACTCCAGGTAAAGAAGGTGAAT
GGTGTTGAGGTTGAGAATTTGAAGCATTTGTGCAGTATCGTGGATAACTGCACTGAAGAA
AACTTGAGAATTGATTTGGATGATGAGCGGGTGATCGTCCTGAAATTTCAGAACGCGAGG
CTTGCCACGTCTCGGATCCTCAAGCGGCACAGGATTCCATCAGCCAGGTCGAGTGACCTT
GTCGATGAACAATCGAGCAGTGGTGAGACTGAGGTGTCATGCACAAACTGACGCATTTTC
ATAGAGGTAGCTACACAGTTTATGCGGAAGCATCGATATTAGCTCCATTGCTTTTCCAGA
CAGATGTGATGCGGTAGGCTGAGAACTACCTGGAGTTGCCATGAGCCCATCGGTTGCGGT
GGGCCCCTGTTTGGCTGATTTAGTTTTGACAGAAGGAAGAGGAGGAAGTCTTCAGCAAAT
AAGAAGAACCCAAGTTCTTCAGCCTGAGTTGTAACACTATCATTCTTTGCTCCCCTCCCA
ACTATTTATCATTCTTTGTTTCGGCACCGTACGGGTTTTGGCAACTTTACGTTAAATTCA
GATTATGTATCATCGCAAAAGCAGAACATAGGAAATAGGAATTCCAGGAGCCAAGACACT
TTGTTCCAAACTGTACAAGTTCTGCTGACATGTTAATTCTTTGGATGCTGCGGATGAATT
TATAGAAAAATTTAGC

Homology of Contig U35_6469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34460.1	615	3e-168	protein\|OsDegp7 - Putative Deg protease homologue, expressed
Brachypodium v1_2	Bradi2g25260.1	586	3e-172
Arabidopsis v10	AT5G36950.1	586	1e-143	\| Symbols: DegP10 \| DegP protease 10 \| chr5:14594992-14598216 FORWARD LENGTH=586