barSeed - Barley Seed Development Database

Probe CUST_36300_PI390587928

Source Contig U35_6470

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36300_PI390587928	Hv_44K_v2	ATGACGCAGATGGTGCAGTTCCTGGCCAACAACAGCGCGCCATTCACCGTCAACATCTAC	1055	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374657	2199	2e-24	1028 - 1087	100	60 / 60	plus	ABC48041
MLOC	MLOC_63574.2	2753	2e-24	1412 - 1471	100	60 / 60	minus	ABC48041
MLOC	MLOC_63574.1	3355	2e-24	1887 - 1946	100	60 / 60	minus	ABC09191 ABC48041
JLOC1	JLOC1_41656.1	4054	8e-25	1354 - 1413	100	60 / 60	plus
JLOC1	JLOC1_41655.2	4257	8e-25	2825 - 2884	100	60 / 60	minus
JLOC1	JLOC1_41655.1	4368	8e-25	2936 - 2995	100	60 / 60	minus
Harvest35	U35_6470	1573	3e-25	1056 - 1115	100	60 / 60	plus

Contig Sequence (1573 bp)

>U35_6470 1573 Hv_44K_v2
ATCCTCGGTCCCCGGCCGGCGTTGCCTCGACTCCGAGTCGCTCTCAGTTCAAAAGCATCC
ACCCTTTTCCCCCAATCTTTTCGATCTCCCCTTCCTTCCTCTGTTTCGTTTCTTGCCTTT
TTGGCTCCGGGAAGGAATTTCCGGCATTCACATGCGACTCTCGCCCCCCTCCCTATCCCT
TTCTCCCCGAGCTGTTGGTGTCACCACGGGATCGATCGGATAGGAAATCCCAGGCCGAGA
AGAAACCGTGTCTAGTTTTCGGTTTCGTGCGCAATCCCCCATTGCCGTTTTTTGAAGCTC
TTTCACTCCGCCCTCCGATTTATACTCCCTTCGCCGGCATTGTCCCGGATGTCCCCTGTT
CGACCGAATCTCGAGTCGATTCCCGCCTCCCTTCGGATCGGCAAATCTCGGAGCTTCCCC
TGGTCCTGATTCCCAACCCGTCGCGACGGGAGATCTTTAATCTTTCGTCAGTTCGCCGGT
GGTGAGAGGCCCAATGTCGGCTAATCTGGGCGCGTGGCTTTGTGTGCTGGCCGCGGTGGC
GGTGGCGGCCGTGCTCCCCCCGGCGGCGGACGCGCTGGGGATGAACTGGGGCACGCAAGC
CACGCACCCGCTCTCGCCCAGGATCGTCGTGCAGATGCTCAAGGACAACGGCATCAAGAA
GGTCAAGCTCTTCGATGCCGACCAGGCCACCCTCAGCGCGCTCGCCGGCACCGATATCGA
GGTCATGGTCGCCATCCCAAACAACCTGCTCGACCTCATGAACGAAAAGGATAACGCCAG
GGAGTGGGTGCGCCACAACATCTCCCGTTACCATTTCGACGGCGGCGTCAACATCAAATA
TGTGGCCGTGGGCAATGAGCCGGGGGGTGGCGTCCTACAACGGCACCTTCGACAAGGTCA
CCTTCCCGGCGCTGCAGAACATCCAGAACGCGCTCAACGACGCCGGATTCAGCGAGATCA
AGGCCACCGTGCCGCTCAACGCCGACGTCTACAACTCGCCCTCCGCCAACCCGGTGCCGT
CGGCAGGCCGGTTCCGGACGGACGTCACCCAGCTCATGACGCAGATGGTGCAGTTCCTGG
CCAACAACAGCGCGCCATTCACCGTCAACATCTACCCCTACCTCAGCCTCTACCTCAGCG
CCGACTTCCCCGTCGACTTCGCCTTCTTCGACGGCCTCGCAACGCCGGTGGTCGACGGCG
TCAACACGTACACCAACGTGTTCGACGCCAACTTCGACACGCTGGTGTCCGCGCTGGCCG
CCGTCGGCCACGGCGACCTGCCCATCATCATCGGCGAGGTCGGCTGGCCGACGGACGGCG
ACAAGCACGCCAACAACGCACTCGCCAAGCGCTTCTACGACGGTCTGCTGCCGCGGCTGG
CGGCCAACACCGGCACGCCGCTCCGGCCCGCGCAGTACATGGAGGTGTACCTGTTCGGGC
TCCTGGACGAGGACGTCAAGAGCGTGGCGCCGGGCGCGTTCGAGCGGCACTGGGGCGTCC
TCCGCTTCGACGGCCAGCCAAAGTTCCCCATGGACCTCNACGGGGAAGGGCAGAACACGA
TGCTGGTGCCGGC

Homology of Contig U35_6470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57880.2	492	5e-148	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g06050.1	494	5e-161
Arabidopsis v10	AT2G19440.1	478	8e-132	O-Glycosyl hydrolases family 17 protein \| chr2:8418164-8419806 REVERSE LENGTH=478