barSeed - Barley Seed Development Database

Probe CUST_36299_PI390587928

Source Contig U35_6471

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36299_PI390587928	Hv_44K_v2	TAATCTTCTTGTACATGCAAGCCGTTGGCAAGAAGAAGAAGAACACCATCCGTCTTCCTC	106	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.274	8.176	0.515	0.556	0.942	0.839
Raw	64.742	89.294	4.809	6.279	3.431	3.513

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364965	1690	2e-24	107 - 166	100	60 / 60	plus	None
MLOC	MLOC_44861.1	1484	2e-24	105 - 164	100	60 / 60	plus	None
MLOC	MLOC_44861.2	2024	2e-24	1416 - 1475	100	60 / 60	minus	None
JLOC1	JLOC1_29110.1	1905	8e-25	240 - 299	100	60 / 60	plus
Harvest21	ABC14602	616	3e-25	108 - 167	100	60 / 60	plus
Harvest21	ABC14603	620	1e-23	77 - 136	98	59 / 60	plus
Harvest35	U35_6471	650	3e-25	107 - 166	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_6471 650 Hv_44K_v2
GCACGAGGGAAGAGCACAACAACAATGGCGCCTGATCTGAACCCCTCTCCAGAACTCAAG
CATGTCCTCCTATGGTCAGTACCTCTACTCATCATAGCTCCCACGGTAATCTTCTTGTAC
ATGCAAGCCGTTGGCAAGAAGAAGAAGAACACCATCCGTCTTCCTCCGAGTCCACTGAGG
CTGCCAATCATAGGGCATCTGCACCTGATGGTGCACGAGCCCCACCGGTCGCTGCAGAGG
CTGGCCCGCAGCCTAGGCCCCGTCGTCCACCTGCAGCTTGGCGGCGTCGCGGCCATCGTG
GTGTCGTCGCCGGAGGCTGCCAAGGAGGTGCTCAAGACGCATGATGTCCATTGCTGCAGC
CGACCCTCTTCACCAGGTGCAAAATTGATCACCTACGGCAACCAAGACATCGCGTTCTCG
CCGTACAACGCAAGCTGGCGCGAGAGGCGCAAGCTGTTCGTCTCGGAGCTCGTAAGCAGC
AAACGCGTCCAGTCTTTCGCTTACGCACTACAAGCTCAGGTCGGCGAGCTGATCCAATCA
CTCTCACTACGGTCTCCGCCGAGGGAGCCCGTCAACCTCAACGAGACCCTCTTCACGCTC
ATCGACGGCTTCATCGGCACGGTGGCGTTCGGGAGCATGAAGGGCGCCAA

Homology of Contig U35_6471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None