barSeed - Barley Seed Development Database

Probe CUST_36281_PI390587928

Source Contig U35_6490

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36281_PI390587928	Hv_44K_v2	TTTCGTCCAATGTAACCTGAGATGGGTACCTTCTCTCAGCACGCATGTGTTAATGATATG	2071	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.522	1.647	1.102	0.817	0.408	0.454
Raw	114.803	198.203	112.975	138.425	23.393	27.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24458.1	2210	8e-25	2132 - 2191	100	60 / 60	plus
Harvest35	U35_6490	2159	3e-25	2072 - 2131	100	60 / 60	plus

Contig Sequence (2159 bp)

>U35_6490 2159 Hv_44K_v2
CCCCGGGCTGCAGGAATCGGCACCGGCGGCTTCCCCGCCAGCTTCATTAACAACGCCCAG
GACGACAGCGGCGCGATCATCACTATCCACCCGCCCTTCCCCGGGGACCCTGTCCGCGTC
ATCGAGACGGCTGACGGCGCGCTGCGCGAGGCGGATGGCCGCCCCCCGATGTTCTCGCCG
GCGCAGGAGGCGCTCCTCATGGTGCACCGGCGGATCCTGGAGACGCAGCCTGACGACGGG
GATGAGGACGGCGAGTACGGTCCCAGGGGCAAGGACGCCCGGGACCGGGGTAAGGTGACC
ACCCGGCTCATCGTGCCACGGCAGCATGTGGGGTGCCTGCTTGGCAAGGGTGGCAAGATC
ATCGAACAGATGAGGTCTGAGACCAAGACGCACATCAGGATCCTGCCTCGCGAGCAGAAC
ATGCCGCGATGTTTATCGTTGTCGGAGGAGGTTGTGCAGGTTGTTGGAGAAGGAAATAAT
GTTAAAAAGGCTGTAGCGATCATCTCTGACCGTTTAAAGGAAAGCTTACACCGTGATCGT
GGTCCCTTCCTTCGTGGACGAAATTCACCAGAGCATCGTATTTCTCAGGCTGATGAATAC
CTGGGTGGTGGTCAGCAGATGCCTGCATTTGAAGAACCTTATCCCCGATTTGACCAAATT
AGAAATAATGGTAGCATGGAGCCACCAGGATATGAGTTTGATTCAAATGGTAGCAAGTTC
AATGAGCATCCAGAGATTCCATACGATGAAATCATATTTCGAATCCTTTGCCCAAACGAC
AAGGCTATCAGTTTGGTTGGATCCCGTGACGGAATAATTGATATGTTACAGGCTGAAGTT
GGTGTTGATGTTAGGCTTACTGATCTTATTGCTGGATCTGACGAAAGGACCTTAATCATT
ACATCAAGAGAGGGCCCAGACCATGAGCTTTTCCCAGCTCAGGAAGCATTGCTGCACATC
CAAACCTTTATCGTGGATCTTGGCCCTGACAAGGATAACATTATCACAACAAGGTTACTT
GTCCCTTCAAGTGAAATTGCTTGCTTTGAGGGGAGGGACGGATCATTATCTGATATACAG
AGACAAACTAGCGCAAATGTACAGATATTACCAAGAGAAGAACTTCCTTCTTGTGCCCTG
GAATCTGATGAGCTCATACAGATTGTAGGAGAGATTCGAGCTGCTCGAAATGCTCTCATG
CAAGTAACTACGAAATTACGAAGTTACATATACCGTGAGATGCCTGCTCCTATCCAAATT
GGCGGCATTAATGTACATGGATCCATTTCTCCAGCAAAAGGCTCACCTCGAGGACTATAT
GCTGGAAATGACCTTCCAATGCCTATCTACCAACAAGCACCACAAATGGCAACTTCTTGG
CACTCAAAGGATAGTGGACTTAGTGCAAGTGGATCATTTGAGCAAGGGAGCAGCATTAAT
GATGATATGAGACAAAGTAATACAAAACGATATGCTGTTCCCCTAGTGACTAGAAGCACA
TTAGAAGTTGTCATACCCCAGAGTGCAGTTGCAAGCCTCAGCATGAGGGCTGGAAGCAAG
CTTGCCCAAATAAGCGAGATGTCCGGTGCATCCGTCACGCTTGCTGAAGAAAGACCTGGA
GTCACGGAAAAAGTTGTTCGAATATCTGGTACCCCCGAGCAGGCCGACAAAGCTCAGAGC
TTGCTTCAGGGGTTCATACTTAGCATCCAAGACGACATTCCTTCGGGCTAACAGAGCCAT
GGCTGTGTCTTACCCATGGCGTGCTCAATAGGTGCCGCTTGTCTAATTCTTGTTTCCAGG
AATTGCCTGTGTACTTTAGAAGGAATGCACGAGTGTATCTCTCTCCAGTTGTACGCATTT
ACCCTGATGAAGCCCTGTGTCTTTATTTGTAAAGTGTTCGTGTATGATATTATCTGATCT
TTAACTATTCAAGCTGTTGTGTTGTATTACGAATGTACTTTCTTTTTCACATTGAGTAGG
CTAAGAAACACCGTGGAGATTACTTTGTACACCTCTTTCAATCTGTATGACTATGTACTT
TCTCTGATGCTAGCAATTGCAGATTGGGTGCTTTCGTCCAATGTAACCTGAGATGGGTAC
CTTCTCTCAGCACGCATGTGTTAATGATATGAAAATATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6490 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g23460.1	663	0.0	protein\|KH domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g41670.3	667	0.0
Arabidopsis v10	AT5G53060.1	652	4e-155	RNA-binding KH domain-containing protein \| chr5:21515355-21518197 FORWARD LENGTH=652