barSeed - Barley Seed Development Database

Probe CUST_36279_PI390587928

Source Contig U35_6492

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36279_PI390587928	Hv_44K_v2	GGTCTTACACTATGTTGGTATAATCGTCTTCCCAACGTGAAAAGATTAATGGAATTGTTT	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64503.2	2149	2e-24	43 - 102	100	60 / 60	minus	ABC19922
MLOC	MLOC_64503.3	2150	2e-24	43 - 102	100	60 / 60	minus	ABC19922
MLOC	MLOC_64503.1	2376	2e-24	352 - 411	100	60 / 60	minus	ABC19922 ABC43886
MLOC	MLOC_64502.1	2836	2e-24	2370 - 2429	100	60 / 60	minus	ABC02888 ABC19922 ABC43886
JLOC1	JLOC1_42363.1	2260	8e-25	1974 - 2033	100	60 / 60	plus
JLOC1	JLOC1_42362.2	2773	8e-25	2290 - 2349	100	60 / 60	minus
JLOC1	JLOC1_42362.1	3165	8e-25	2682 - 2741	100	60 / 60	minus
Harvest21	ABC19922	625	3e-25	23 - 82	100	60 / 60	minus	ABC19922
Harvest35	U35_6492	625	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_6492 625 Hv_44K_v2
CCAGCATTGACCCGTGTGGTGCTCATGTCATGCCGTTGTTGCACAACGGTGCGCAGGAGG
TGATAACAGTGCACAACACGTCTGGGCTCGCGCTCAATGGCAATCCTTCTGATGCTCACA
GCTTGTTCCCAGGATATACGTGGACGGTTGCGCTGTGTGCTGCCTGCGAGTCCCACATCG
GCTGGCTGTTCAGGGCTGACAAAAGGAACCTTCTTCCGAAATCCTTCTGGGGGATCCGCA
TTTCCCAAACCTCAGACGGTACACAATCGGCTCAGGACCGACGTTCCGTGTAAGGCAGCG
GCCGCGGTTCTTGGCGCGATTCTCGTCATCCTTCAGCAGACCCGTGACCTATCTTCGGTG
GCCTGCTCGTTGTAGACCTTGCTGGATTTGGCCCGACGGTTTCCTGCTCGTTGTAGACCA
TGCTGGATTTGGCCTGACGGTTTCATCTAGTATTCCCACTGCAGATTGCAGGAGTCCAGT
TCGACTTCGTTCAGTCCCCATGCTGAATGTGGCTTGACGATTTTTTGTTCAGCCGCCTTA
AATGGTCTTACACTATGTTGGTATAATCGTCTTCCCAACGTGAAAAGATTAATGGAATTG
TTTTCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None