barSeed - Barley Seed Development Database

Probe CUST_36275_PI390587928

Source Contig U35_6496

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36275_PI390587928	Hv_44K_v2	AAGGTTGTTACAGATACCGGAGTTGTTCTGGAGCAAGAAAGGCTTGATTTCAGCAGCAAC	796	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51985.5	5200	2e-24	3950 - 4009	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.4	5181	2e-24	3924 - 3983	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.2	5022	2e-24	4053 - 4112	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.1	5522	2e-24	4269 - 4328	100	60 / 60	plus	ABC13136
JLOC1	JLOC1_33251.4	5186	8e-25	3929 - 3988	100	60 / 60	plus
JLOC1	JLOC1_33251.3	5260	8e-25	4003 - 4062	100	60 / 60	plus
JLOC1	JLOC1_33251.2	5380	8e-25	4123 - 4182	100	60 / 60	plus
JLOC1	JLOC1_33251.1	5092	8e-25	4123 - 4182	100	60 / 60	plus
Harvest21	ABC13716	1105	3e-25	797 - 856	100	60 / 60	plus
Harvest35	U35_6496	1105	3e-25	797 - 856	100	60 / 60	plus

Contig Sequence (1105 bp)

>U35_6496 1105 Hv_44K_v2
GAGACTGATGAACAAGAAGCTTGGCGATCTGCAACTCGAGAATAACTACCTTGAGAAGGA
ACTCAGTAGAACTTTAAGCATCTGTGATGGCTCTAGTCCAGAGATTGGTTCTGCAAGAAG
GCGTACCATGCGAAGAGATACCAAGCTATTGAAATCTGGCAGGAAGAGTCTACAGGAGAG
TGTGGTGAACGTGGAACAGCGCAAAGAAGTCGACAATGCTGGTCTTGAAAAATCAAATGA
AATGTTGAGGGAGGAGGTTCACAAGCTGCAGAGTGAAATGCAACTGCTTAGGAACAACGA
ACAGCCAGTGATTGATGTCCGGTCTTGCGATGCAGAGATCTCGAAATTGCTGGCTAACAT
GCAAATTGCCACTGCCAACGCAGCTCTCTTCAAGGAGAAGGTGCTAGAGCTCATCGTAGC
ATGCGAGAGTTCTGAGATAAGTGAAATAGTACAAAAGGAGGTGTTGAAAGAGGAGATCAG
TCGAAGGAACTCTTACGTCGATGCACTGAAGGACAAGCTAAATGCTATTGAGATAGAGAA
CAGAAGGCTGAAGGTTGACCTGAATGGTGACTTCACAGTGCTAGGAGCATTGCAAACTGA
AGTCAGTGCCTTAGAGAGACAAACCTTGTCACTGGCCAAGGATTGTGCACCTTCGAACAA
ACTCAAGAAAGAGGAATTTCTTTTGTCACCTCAGCTTTCAAAGATTGCTGTGAAACCAAG
CAATGACCAAAACTCGACTAAGCTGGTGAAAGACATGGAGCTGCAGAAACTGCATGGAAC
CATCAAAGCACTCCAGAAGGTTGTTACAGATACCGGAGTTGTTCTGGAGCAAGAAAGGCT
TGATTTCAGCAGCAACCTCCAGGACGCCAGGAAGCAGATTGAAATGCTCAAGCTCAAGGA
CGTCCTGGACAGCGACGCGAGCGATGCGAACTACGAGCGGATGCTCAAGGACATACAGCT
TGACCTCGTCCAGACTCCCAGCCGTCGAGCCATCGGCTCACACCGCCTGAAGAAGAAGAT
CACAGCCCAGCCTGATGAGAAGATGCTTGCGCTGTGGAGCGTCGTGAGAACAAGTAGCGG
CAGCGGCAGGCACGATGATCTGCGG

Homology of Contig U35_6496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41200.1	1592	2e-166	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi4g02420.1	1546	0.0
Arabidopsis v10	None