barSeed - Barley Seed Development Database

Probe CUST_36273_PI390587928

Source Contig U35_6498

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36273_PI390587928	Hv_44K_v2	TTACATTCTGTTGCGAGCTTCACATGGTGCGCTGAATAAATCTATTTCCCCGGTAAAAAA	852	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.794	0.674	0.807	1.482	5.584	14.468
Raw	2.647	3.468	5.531	22.433	26.827	77.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64017.1	1061	2e-24	36 - 95	100	60 / 60	minus	ABC13573 ABC15214
MLOC	MLOC_64017.2	1073	2e-24	23 - 82	100	60 / 60	minus	ABC13573 ABC15214
JLOC1	JLOC1_41993.1	1411	8e-25	995 - 1054	100	60 / 60	plus
Harvest21	ABC13573	541	3e-25	27 - 86	100	60 / 60	minus	ABC13573
Harvest35	U35_6498	938	3e-25	853 - 912	100	60 / 60	plus

Contig Sequence (938 bp)

>U35_6498 938 Hv_44K_v2
GCGGGACAGCGCTCAACCAGCTCCTCTTCAGGAAGAAGCGGCTCAACGTGGACCAGATCA
CCCCCTACTCCCTGGGCATCCAGATCGGGTGGTTCAAGAAAGTGCTCGCCGCGATCGCCT
CCACCGACGTCGAGCGGCGGGAGATCATGGCGAGCTCGCTGTTCCTGGTGGGGGAGATCG
GCGCCAACGACTACAACCACCCCTTGTTTCAGAACAGGACGCTCGGGTTCGTGCGGCCGC
TGGTGCCCCGGGTGATCAGGTCCATCGCGCTCTCCGTGGAGGCCCTCGTCAAGCTGGGCG
CCAAGAACGTCTACGTGCCGGGCATCTTCCCGCTGGGCTGCGTGCCGCGGTACCTCTACT
TCTACCGCGGCGGCGAGCCCGGCGGCTACGACTCCGCCGGCTGCCTCCGGTGGCTCAACG
GCCTCACCGCCGACCACAACCGCATGCTCAAGGGCAGGCTCCGCAAGCTGGCCCGCGCCC
ACCCCGGCGTGTCCATCACCTACGTGGACTACTACAACGAGGTGCTCAGCCTGATCACCA
GGCCGGCGGCGAACGGGTTCGCACCGGGGACGGTGCTTCACGCGTGCTGCGGCGGCGGCG
GGCCGTACAACGCCAACCTGACCCTCCACTGCTCGGACCCGGGGGTGGTGCCGTGCCCGG
ACCCCCGAGGTACGTGTCGTGGGACGGCCTGCACATGACGGAGGCGGTGTACAAGATCAT
GGCCCGCGGGATGCTCCACGGCCCCTTCGCCAAGCCGTCCATCATGTCCACATGCAAGCT
AAGCTAGCTGGGCACCTATACAGTACATCATGTGCTACAAGTCCATTTCATTTGCTTGGG
ATTTTATTGGGTTTACATTCTGTTGCGAGCTTCACATGGTGCGCTGAATAAATCTATTTC
CCCGGTAAAAAAAATTTTCCAATAAAAAAAAAAAAAAA

Homology of Contig U35_6498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44780.1	392	2e-94	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi1g19840.1	388	2e-119
Arabidopsis v10	AT1G28600.1	393	7e-51	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr1:10051228-10053073 REVERSE LENGTH=393