barSeed - Barley Seed Development Database

Probe CUST_36267_PI390587928

Source Contig U35_42991

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36267_PI390587928	Hv_44K_v2	TTGAGCAAACAATCATATCCAAGATCATGACACGCAGCCCTCATTACGTCACAGCTGACA	506	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53965.2	1467	2e-24	510 - 569	100	60 / 60	plus	None
MLOC	MLOC_53965.3	1991	2e-24	297 - 356	100	60 / 60	plus	ABC39081
MLOC	MLOC_53965.1	2243	2e-24	512 - 571	100	60 / 60	plus	ABC39081
JLOC1	JLOC1_34709.1	2254	8e-25	536 - 595	100	60 / 60	plus
Harvest21	ABC39080	610	3e-25	507 - 566	100	60 / 60	plus
Harvest35	U35_42991	610	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_42991 610 Hv_44K_v2
GCAAGGAAGGAGCCCAACAAGAAGCAGCGACCGCTCCCCTCCTCCAACATTCGCCGCCGC
CGCCACCTCGTCGCCGTCGTCCTCCTTGGCAACCCCCTAACCGTAGGCTAAGCCCCTTTT
AGAGCTTTCATCCACCTTCGACGGCACAGCCATGAACTCCGGCGCCACTGCCGCCGTGGC
GCAGAACCGACGCACGCGCAGCCGTCCGCCGTCGGCGGCCTCCTCCCGCAAGTCAGATGA
CCCCTCAGCCGCTGCCGCCAACGGAAACGGGAAGGTCCCCTCCAAGCCCACCTCTCCCAA
CCACGTCGCAGGGGAGAGGACGGTCAAGAAGCTGCGGCTGTCGAAGGCGCTGACGATCCC
GGAGGGGACGACGTTGTCAGAGGCGTGCCGGCGGATGGCAGCGAGGCGGGTCGACGCGGT
GCTGCTCACCGACGTCAACGGCCTCCTCTCAGGCATTGTGACCGACAAGGACATAGCCAC
AAGGGTTATTGCCGAGGGGCTGCGGGTTGAGCAAACAATCATATCCAAGATCATGACACG
CAGCCCTCATTACGTCACAGCTGACACACTTGCTATCGAGGCACTGCAGAAAATGGTCCA
AGGGAAATTT

Homology of Contig U35_42991 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07190.1	543	2e-58	protein\|CBS domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g24320.2	529	6e-62
Arabidopsis v10	None