barSeed - Barley Seed Development Database

Probe CUST_36266_PI390587928

Source Contig U35_42992

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36266_PI390587928	Hv_44K_v2	CCTATAACTCTCTGATGTATGGGTTAATTCAGGATAAGAAACTTCACCACGCAATGGCAC	518	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.033	1.783	1.199	0.725	0.504	0.267
Raw	95.316	114.619	77.389	63.254	17.709	10.421

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39738.2	3357	2e-24	1491 - 1550	100	60 / 60	plus	ABC39083
MLOC	MLOC_39738.4	2981	2e-24	972 - 1031	100	60 / 60	plus	ABC39083
MLOC	MLOC_39738.1	3555	2e-24	1492 - 1551	100	60 / 60	plus	ABC39083
JLOC1	JLOC1_25928.1	3376	8e-25	1289 - 1348	100	60 / 60	plus
Harvest21	ABC39082	680	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_42992	680	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_42992 680 Hv_44K_v2
GAATGCAATGATTGAAGGGTACCGTAAGGCAGGAAGGATGCAGGATGCATTGGGGATTAA
GGAGCTGATGGAAGGAAATGGGTGCCGCCCGGATGGTTGGACATACGGCACTTTGATTCA
TGGCCTCTGTGATGAGAAGATGGATGAAGCTGAGCAATTGCTGGATAGTGCTGTTAAAGG
AGGTTTTACACCTACGGTTGTCACATTCACTAACCTCATCGATGGGTACTGCAAAGCTGA
AAGGATTGATGATGCCCTCAGGGTGAAAAATAATATGATGTTGAGTAAGTGTAAACTCGA
TATACATGTTTATGGGAAGTTGATCAATAGCCTCATTAAGAAGGATATGTTAAAAGAGGC
GAAGGAGTTGTTAACTGAAATTTCGGCAAATGGTTTGGTTCCAAATGTGTTCACCTACAC
ATCTGTAATTGATGGCTTTTGCAAGATCGGGAAGGTTGATTTCGCACTAGAGGTCTGGAA
AATGATGGAACGCGATGATTGCCAGCCAAACGTATGGACCTATAACTCTCTGATGTATGG
GTTAATTCAGGATAAGAAACTTCACCACGCAATGGCACTGANTACTAAAATGCAAAAAGA
TGGAANTACTCCTAATGTTATCACCTACACCACTTTGGTTCAAGGCCAGTGNCATCAGCA
TGAATTTGATAATGCTTTCA

Homology of Contig U35_42992 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g47570.1	992	3e-120	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi1g33360.1	964	6e-128
Arabidopsis v10	None