barSeed - Barley Seed Development Database

Probe CUST_36265_PI390587928

Source Contig U35_42993

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36265_PI390587928	Hv_44K_v2	CTGTCATTCTTTGATTGCCACATTGTGGTGGTATAGATGCAGTACAGTTCCTTTACATTG	51	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39738.4	2981	2e-24	2849 - 2908	100	60 / 60	plus	ABC39083
MLOC	MLOC_39738.1	3555	2e-24	3365 - 3424	100	60 / 60	plus	ABC39083
JLOC1	JLOC1_25928.1	3376	8e-25	3162 - 3221	100	60 / 60	plus
Harvest21	ABC39083	508	3e-25	52 - 111	100	60 / 60	minus	ABC39083
Harvest35	U35_42993	508	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (508 bp)

>U35_42993 508 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGACTGTTTTATATCATTCAAAAATAAACTTCTCCAATGTAAA
GGAACTGTACTGCATCTATACCACCACAATGTGGCAATCAAAGAATGACAGGTATAATTG
AGTACCCCTGAAGCAAAGCAAGCAATGAGACTCCATAAGCCCTGGGCTTGGGTGAGCCTG
ACACTGACTATCTCCTAACTGCGATGAAGAGAAAGTGCCTTTGATTTGAATAGGAATTGG
TACGATAATCCTGTTTCTGGCAAACTGATCAGCTTGAGCAACATGTATTGCCATTTAGCT
GATCAATTATGCCTATCTACGGCATCCTAACTGGATGTTGCTCATCTCAAGTCAGTTATG
TACAACACGGTGCTGCACGCAACCTGCACATGTGCCTCGCTAATATCAAAATTGCACATG
TCTTCCATTGGACTGAAAGTTACAGAAGAAATGAGTGGCCAATGAAACACACCATCTATT
AGCATGAACATATCAGTCAAGCTGACTC

Homology of Contig U35_42993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None